A benchmark dataset for analyzing and visualizing the dynamic epiproteome
Kaur, Sandeep, Baldi, Benedetta, Vuong, Jenny, O'Donoghue, Seàn I.
Published in Data in brief (01.08.2019)
Published in Data in brief (01.08.2019)
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Journal Article
COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Binder, Janos X, Pletscher-Frankild, Sune, Tsafou, Kalliopi, Stolte, Christian, O'Donoghue, Seán I, Schneider, Reinhard, Jensen, Lars Juhl
Published in Database : the journal of biological databases and curation (25.02.2014)
Published in Database : the journal of biological databases and curation (25.02.2014)
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Journal Article
Visualization of omics data for systems biology
O'Donoghue, Seán I, Gehlenborg, Nils, Baliga, Nitin S, Goesmann, Alexander, Hibbs, Matthew A, Kitano, Hiroaki, Kohlbacher, Oliver, Neuweger, Heiko, Schneider, Reinhard, Tenenbaum, Dan, Gavin, Anne-Claude
Published in Nature methods (01.03.2010)
Published in Nature methods (01.03.2010)
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Journal Article
SnapShot: Phosphoregulation of Mitosis
Burgess, Andrew, Vuong, Jenny, Rogers, Samuel, Malumbres, Marcos, O’Donoghue, Seán I.
Published in Cell (15.06.2017)
Published in Cell (15.06.2017)
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Journal Article
Comprehensive comparison of large-scale tissue expression datasets
Santos, Alberto, Tsafou, Kalliopi, Stolte, Christian, Pletscher-Frankild, Sune, O'Donoghue, Seán I, Jensen, Lars Juhl
Published in PeerJ (San Francisco, CA) (30.06.2015)
Published in PeerJ (San Francisco, CA) (30.06.2015)
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Journal Article
Visualization and Analysis of Epiproteome Dynamics
Kaur, Sandeep, Baldi, Benedetta, Vuong, Jenny, O'Donoghue, Seán I.
Published in Journal of molecular biology (05.04.2019)
Published in Journal of molecular biology (05.04.2019)
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Journal Article
Dark Proteins Important for Cellular Function
Schafferhans, Andrea, O'Donoghue, Seán I., Heinzinger, Michael, Rost, Burkhard
Published in Proteomics (Weinheim) (01.11.2018)
Published in Proteomics (Weinheim) (01.11.2018)
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Journal Article
Monogenic and polygenic determinants of sarcoma risk: an international genetic study
Ballinger, Mandy L, PhD, Goode, David L, PhD, Ray-Coquard, Isabelle, Prof, James, Paul A, MBChB, Mitchell, Gillian, PhD, Niedermayr, Eveline, BSc, Puri, Ajay, Prof, Schiffman, Joshua D, Prof, Dite, Gillian S, PhD, Cipponi, Arcadi, PhD, Maki, Robert G, Prof, Brohl, Andrew S, MD, Myklebost, Ola, Prof, Stratford, Eva W, PhD, Lorenz, Susanne, PhD, Ahn, Sung-Min, MD, Ahn, Jin-Hee, MD, Kim, Jeong Eun, MD, Shanley, Sue, MD, Beshay, Victoria, PhD, Randall, Robert Lor, Prof, Judson, Ian, Prof, Seddon, Beatrice, PhD, Campbell, Ian G, Prof, Young, Mary-Anne, MSc, Sarin, Rajiv, Prof, Blay, Jean-Yves, Prof, O'Donoghue, Seán I, PhD, Thomas, David M, Prof
Published in The lancet oncology (01.09.2016)
Published in The lancet oncology (01.09.2016)
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Journal Article
Visualization of macromolecular structures
O'Donoghue, Seán I, Goodsell, David S, Frangakis, Achilleas S, Jossinet, Fabrice, Laskowski, Roman A, Nilges, Michael, Saibil, Helen R, Schafferhans, Andrea, Wade, Rebecca C, Westhof, Eric, Olson, Arthur J
Published in Nature methods (01.03.2010)
Published in Nature methods (01.03.2010)
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Journal Article
SnapShot: S-Phase Entry and Exit
Burgess, Andrew, Vuong, Jenny, Marzec, Kamila A., Nicolai de Lichtenberg, Ulrik, O’Donoghue, Seán I., Jensen, Lars Juhl
Published in Cell (17.10.2019)
Published in Cell (17.10.2019)
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Journal Article
Aquaria: simplifying discovery and insight from protein structures
O'Donoghue, Seán I, Sabir, Kenneth S, Kalemanov, Maria, Stolte, Christian, Wellmann, Benjamin, Ho, Vivian, Roos, Manfred, Perdigão, Nelson, Buske, Fabian A, Heinrich, Julian, Rost, Burkhard, Schafferhans, Andrea
Published in Nature methods (01.02.2015)
Published in Nature methods (01.02.2015)
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Journal Article
Visualizing biological data-now and in the future
O'Donoghue, Seán I, Gavin, Anne-Claude, Gehlenborg, Nils, Goodsell, David S, Hériché, Jean-Karim, Nielsen, Cydney B, North, Chris, Olson, Arthur J, Procter, James B, Shattuck, David W, Walter, Thomas, Wong, Bang
Published in Nature methods (01.03.2010)
Published in Nature methods (01.03.2010)
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Journal Article
Reflect: augmented browsing for the life scientist
Pafilis, Evangelos, O'Donoghue, Seán I, Jensen, Lars J, Horn, Heiko, Kuhn, Michael, Brown, Nigel P, Schneider, Reinhard
Published in Nature biotechnology (01.06.2009)
Published in Nature biotechnology (01.06.2009)
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Journal Article
SnapShot: Insulin/IGF1 Signaling
Ma, David K.G., Stolte, Christian, Krycer, James R., James, David E., O’Donoghue, Seán I.
Published in Cell (07.05.2015)
Published in Cell (07.05.2015)
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Journal Article
How to learn about gene function: text-mining or ontologies?
Soldatos, Theodoros G., Perdigão, Nelson, Brown, Nigel P., Sabir, Kenneth S., O’Donoghue, Seán I.
Published in Methods (San Diego, Calif.) (01.03.2015)
Published in Methods (San Diego, Calif.) (01.03.2015)
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Journal Article
Visualization of Biomedical Data
O'Donoghue, Seán I, Baldi, Benedetta Frida, Clark, Susan J, Darling, Aaron E, Hogan, James M, Kaur, Sandeep, Maier-Hein, Lena, McCarthy, Davis J, Moore, William J, Stenau, Esther, Swedlow, Jason R, Vuong, Jenny, Procter, James B
Published in Annual review of biomedical data science (20.07.2018)
Published in Annual review of biomedical data science (20.07.2018)
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Journal Article
Text mining for biology--the way forward: opinions from leading scientists
Altman, Russ B, Bergman, Casey M, Blake, Judith, Blaschke, Christian, Cohen, Aaron, Gannon, Frank, Grivell, Les, Hahn, Udo, Hersh, William, Hirschman, Lynette, Jensen, Lars Juhl, Krallinger, Martin, Mons, Barend, O'Donoghue, Seán I, Peitsch, Manuel C, Rebholz-Schuhmann, Dietrich, Shatkay, Hagit, Valencia, Alfonso
Published in Genome biology (01.01.2008)
Published in Genome biology (01.01.2008)
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