Speciation and secondary contact in a fossorial island endemic, the São Tomé caecilian
O’Connell, Kyle A., Prates, Ivan, Scheinberg, Lauren A., Mulder, Kevin P., Bell, Rayna C.
Published in Molecular ecology (01.06.2021)
Published in Molecular ecology (01.06.2021)
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Journal Article
Genomic library preparation and hybridization capture of formalin‐fixed tissues and allozyme supernatant for population genomics and considerations for combining capture‐ and RADseq‐based single nucleotide polymorphism data sets
O’Connell, Kyle A., Mulder, Kevin P., Wynn, Addison, Queiroz, Kevin, Bell, Rayna C.
Published in Molecular ecology resources (01.02.2022)
Published in Molecular ecology resources (01.02.2022)
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Journal Article
Assessing the Future of Solid Tumor Immunotherapy
Guha, Prajna, Heatherton, Kara R, O'Connell, Kyle P, Alexander, Ian S, Katz, Steven C
Published in Biomedicines (11.03.2022)
Published in Biomedicines (11.03.2022)
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Journal Article
Reusable tutorials for using cloud-based computing environments for the analysis of bacterial gene expression data from bulk RNA sequencing
Allers, Steven, O'Connell, Kyle A, Carlson, Thad, Belardo, David, King, Benjamin L
Published in Briefings in bioinformatics (23.05.2024)
Published in Briefings in bioinformatics (23.05.2024)
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Journal Article
Complex Hybridization in a Clade of Polytypic Salamanders (Plethodontidae: Desmognathus) Uncovered by Estimating Higher-Level Phylogenetic Networks
Pyron, R Alexander, O'Connell, Kyle A, Myers, Edward A, Beamer, David A, Baños, Hector
Published in Systematic biology (28.10.2024)
Published in Systematic biology (28.10.2024)
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Journal Article
Discerning structure versus speciation in phylogeographic analysis of Seepage Salamanders (Desmognathus aeneus) using demography, environment, geography, and phenotype
Pyron, R. Alexander, Kakkera, Anvith, Beamer, David A., O'Connell, Kyle A.
Published in Molecular ecology (01.01.2024)
Published in Molecular ecology (01.01.2024)
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Journal Article
Accelerating genomic workflows using NVIDIA Parabricks
O'Connell, Kyle A, Yosufzai, Zelaikha B, Campbell, Ross A, Lobb, Collin J, Engelken, Haley T, Gorrell, Laura M, Carlson, Thad B, Catana, Josh J, Mikdadi, Dina, Bonazzi, Vivien R, Klenk, Juergen A
Published in BMC bioinformatics (31.05.2023)
Published in BMC bioinformatics (31.05.2023)
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Journal Article
Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus)
O’Connell, Kyle A., Oaks, Jamie R., Hamidy, Amir, Shaney, Kyle J., Kurniawan, Nia, Smith, Eric N., Fujita, Matthew K.
Published in Molecular ecology (01.08.2020)
Published in Molecular ecology (01.08.2020)
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Journal Article
Tecovirimat Resistance in Mpox Patients, United States, 2022-2023
Smith, Todd G, Gigante, Crystal M, Wynn, Nhien T, Matheny, Audrey, Davidson, Whitni, Yang, Yong, Condori, Rene Edgar, O'Connell, Kyle, Kovar, Lynsey, Williams, Tracie L, Yu, Yon C, Petersen, Brett W, Baird, Nicolle, Lowe, David, Li, Yu, Satheshkumar, Panayampalli S, Hutson, Christina L
Published in Emerging infectious diseases (01.12.2023)
Published in Emerging infectious diseases (01.12.2023)
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Journal Article
Candidate‐species delimitation in Desmognathus salamanders reveals gene flow across lineage boundaries, confounding phylogenetic estimation and clarifying hybrid zones
Pyron, Robert Alexander, O’Connell, Kyle A., Lemmon, Emily Moriarty, Lemmon, Alan R., Beamer, David A.
Published in Ecology and evolution (01.02.2022)
Published in Ecology and evolution (01.02.2022)
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Journal Article
Phylogenomic data reveal reticulation and incongruence among mitochondrial candidate species in Dusky Salamanders (Desmognathus)
Pyron, R. Alexander, O'Connell, Kyle A., Lemmon, Emily Moriarty, Lemmon, Alan R., Beamer, David A.
Published in Molecular phylogenetics and evolution (01.05.2020)
Published in Molecular phylogenetics and evolution (01.05.2020)
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Journal Article
Diversification of bent-toed geckos (Cyrtodactylus) on Sumatra and west Java
O'Connell, Kyle A., Smart, Utpal, Sidik, Irvan, Riyanto, Awal, Kurniawan, Nia, Smith, Eric N.
Published in Molecular phylogenetics and evolution (01.05.2019)
Published in Molecular phylogenetics and evolution (01.05.2019)
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Journal Article
Phylogenetic partitioning of the third-largest vertebrate genus in the world, Cyrtodactylus Gray, 1827 (Reptilia; Squamata; Gekkonidae) and its relevance to taxonomy and conservation
Grismer, L. Lee, Wood, Jr, Perry L., Poyarkov, Nikolay A., Le, Minh D., Kraus, Fred, Agarwal, Ishan, Oliver, Paul M., Nguyen, Sang N., Nguyen, Truong Q., Karunarathna, Suranjan, Welton, Luke J., Stuart, Bryan L., Luu, Vinh Q., Bauer, Aaron M., O’Connell, Kyle A., Quah, Evan S. H., Chan, Kin O., Ziegler, Thomas, Ngo, Hanh, Nazarov, Roman A., Aowphol, Anchalee, Chomdej, Siriwadee, Suwannapoom, Chatmongkon, Siler, Cameron D., Anuar, Shahrul, Tri, Ngo V., Grismer, Jesse L.
Published in Vertebrate zoology (16.03.2021)
Published in Vertebrate zoology (16.03.2021)
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Journal Article
Contextualizing enigmatic extinctions using genomic DNA from fluid-preserved museum specimens of Desmognathus salamanders
Pyron, R. Alexander, Beamer, David A., Holzheuser, Chace R., Lemmon, Emily Moriarty, Lemmon, Alan R., Wynn, Addison H., O’Connell, Kyle A.
Published in Conservation genetics (01.04.2022)
Published in Conservation genetics (01.04.2022)
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Journal Article
Two new species of Cyrtodactylus (Squamata: Gekkonidae) from the Southern Bukit Barisan Range of Sumatra and an estimation of their phylogeny
Harvey, Michael B, O'connell, Kyle A, Barraza, Gabriel, Riyanto, Awal, Kurniawan, Nia, Smith, Eric N
Published in Zootaxa (23.09.2015)
Published in Zootaxa (23.09.2015)
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