Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog
Osawa, Takuo, Inanaga, Hideko, Sato, Chikara, Numata, Tomoyuki
Published in Molecular cell (07.05.2015)
Published in Molecular cell (07.05.2015)
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Mechanisms of the tRNA wobble cytidine modification essential for AUA codon decoding in prokaryotes
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Book Review
GET pathway mediates transfer of mislocalized tail-anchored proteins from mitochondria to the ER
Matsumoto, Shunsuke, Ono, Suzuka, Shinoda, Saori, Kakuta, Chika, Okada, Satoshi, Ito, Takashi, Numata, Tomoyuki, Endo, Toshiya
Published in The Journal of cell biology (06.06.2022)
Published in The Journal of cell biology (06.06.2022)
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Crystal Structures of Csm2 and Csm3 in the Type III-A CRISPR–Cas Effector Complex
Takeshita, Daijiro, Sato, Momoe, Inanaga, Hideko, Numata, Tomoyuki
Published in Journal of molecular biology (15.02.2019)
Published in Journal of molecular biology (15.02.2019)
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A chemical probe based on the PreQ1 metabolite enables transcriptome-wide mapping of binding sites
Balaratnam, Sumirtha, Rhodes, Curran, Bume, Desta Doro, Connelly, Colleen, Lai, Christopher C., Kelley, James A., Yazdani, Kamyar, Homan, Philip J., Incarnato, Danny, Numata, Tomoyuki, Schneekloth Jr, John S.
Published in Nature communications (06.10.2021)
Published in Nature communications (06.10.2021)
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Crystal Structure of the Cmr2–Cmr3 Subcomplex in the CRISPR–Cas RNA Silencing Effector Complex
Osawa, Takuo, Inanaga, Hideko, Numata, Tomoyuki
Published in Journal of molecular biology (23.10.2013)
Published in Journal of molecular biology (23.10.2013)
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Mechanistic analysis of Riboswitch Ligand interactions provides insights into pharmacological control over gene expression
Parmar, Shaifaly, Bume, Desta Doro, Connelly, Colleen M., Boer, Robert E., Prestwood, Peri R., Wang, Zhen, Labuhn, Henning, Sinnadurai, Krishshanthi, Feri, Adeline, Ouellet, Jimmy, Homan, Philip, Numata, Tomoyuki, Schneekloth, John S.
Published in Nature communications (17.09.2024)
Published in Nature communications (17.09.2024)
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Crystal Structure of the Csm3–Csm4 Subcomplex in the Type III-A CRISPR–Cas Interference Complex
Numata, Tomoyuki, Inanaga, Hideko, Sato, Chikara, Osawa, Takuo
Published in Journal of molecular biology (30.01.2015)
Published in Journal of molecular biology (30.01.2015)
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Structure and Enzymatic Properties of a Two-Domain Family GH19 Chitinase from Japanese Cedar (Cryptomeria japonica) Pollen
Takashima, Tomoya, Numata, Tomoyuki, Taira, Toki, Fukamizo, Tamo, Ohnuma, Takayuki
Published in Journal of agricultural and food chemistry (06.06.2018)
Published in Journal of agricultural and food chemistry (06.06.2018)
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Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Shinya, Shoko, Nishimura, Shigenori, Kitaoku, Yoshihito, Numata, Tomoyuki, Kimoto, Hisashi, Kusaoke, Hideo, Ohnuma, Takayuki, Fukamizo, Tamo
Published in Biochemical journal (15.04.2016)
Published in Biochemical journal (15.04.2016)
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Complete subsite mapping of a “loopful” GH19 chitinase from rye seeds based on its crystal structure
Ohnuma, Takayuki, Umemoto, Naoyuki, Kondo, Kaori, Numata, Tomoyuki, Fukamizo, Tamo
Published in FEBS letters (19.08.2013)
Published in FEBS letters (19.08.2013)
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Snapshots of tRNA sulphuration via an adenylated intermediate
Nureki, Osamu, Suzuki, Tsutomu, Numata, Tomoyuki, Fukai, Shuya, Ikeuchi, Yoshiho
Published in Nature (27.07.2006)
Published in Nature (27.07.2006)
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Synthetic ligands for PreQ1 riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure
Connelly, Colleen M., Numata, Tomoyuki, Boer, Robert E., Moon, Michelle H., Sinniah, Ranu S., Barchi, Joseph J., Ferré-D’Amaré, Adrian R., Schneekloth, John S.
Published in Nature communications (02.04.2019)
Published in Nature communications (02.04.2019)
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Crystal structure and thermodynamic dissection of chitin oligosaccharide binding to the LysM module of chitinase-A from Pteris ryukyuensis
Ohnuma, Takayuki, Taira, Toki, Umemoto, Naoyuki, Kitaoku, Yoshihito, Sørlie, Morten, Numata, Tomoyuki, Fukamizo, Tamo
Published in Biochemical and biophysical research communications (16.12.2017)
Published in Biochemical and biophysical research communications (16.12.2017)
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A class III chitinase without disulfide bonds from the fern, Pteris ryukyuensis: crystal structure and ligand-binding studies
Kitaoku, Yoshihito, Umemoto, Naoyuki, Ohnuma, Takayuki, Numata, Tomoyuki, Taira, Toki, Sakuda, Shohei, Fukamizo, Tamo
Published in Planta (01.10.2015)
Published in Planta (01.10.2015)
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Genetic and Biochemical Characterizations of aLhr1 Helicase in the Thermophilic Crenarchaeon Sulfolobus acidocaldarius
Suzuki, Shoji, Kurosawa, Norio, Yamagami, Takeshi, Matsumoto, Shunsuke, Numata, Tomoyuki, Ishino, Sonoko, Ishino, Yoshizumi
Published in Catalysts (01.01.2022)
Published in Catalysts (01.01.2022)
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Crystal structure and chitin oligosaccharide‐binding mode of a ‘loopful’ family GH19 chitinase from rye, Secale cereale, seeds
Ohnuma, Takayuki, Numata, Tomoyuki, Osawa, Takuo, Inanaga, Hideko, Okazaki, Yoko, Shinya, Shoko, Kondo, Kaori, Fukuda, Tatsuya, Fukamizo, Tamo
Published in The FEBS journal (01.10.2012)
Published in The FEBS journal (01.10.2012)
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Crystal structures and inhibitor binding properties of plant class V chitinases: the cycad enzyme exhibits unique structural and functional features
Umemoto, Naoyuki, Kanda, Yuka, Ohnuma, Takayuki, Osawa, Takuo, Numata, Tomoyuki, Sakuda, Shohei, Taira, Toki, Fukamizo, Tamo
Published in The Plant journal : for cell and molecular biology (01.04.2015)
Published in The Plant journal : for cell and molecular biology (01.04.2015)
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