SARS-CoV-2 Transmission among Marine Recruits during Quarantine
Letizia, Andrew G, Ramos, Irene, Obla, Ajay, Goforth, Carl, Weir, Dawn L, Ge, Yongchao, Bamman, Marcas M, Dutta, Jayeeta, Ellis, Ethan, Estrella, Luis, George, Mary-Catherine, Gonzalez-Reiche, Ana S, Graham, William D, van de Guchte, Adriana, Gutierrez, Ramiro, Jones, Franca, Kalomoiri, Aspasia, Lizewski, Rhonda, Lizewski, Stephen, Marayag, Jan, Marjanovic, Nada, Millar, Eugene V, Nair, Venugopalan D, Nudelman, German, Nunez, Edgar, Pike, Brian L, Porter, Chad, Regeimbal, James, Rirak, Stas, Santa Ana, Ernesto, Sealfon, Rachel S.G, Sebra, Robert, Simons, Mark P, Soares-Schanoski, Alessandra, Sugiharto, Victor, Termini, Michael, Vangeti, Sindhu, Williams, Carlos, Troyanskaya, Olga G, van Bakel, Harm, Sealfon, Stuart C
Published in New England Journal of Medicine (17.12.2020)
Published in New England Journal of Medicine (17.12.2020)
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Single nucleus multi-omics regulatory landscape of the murine pituitary
Ruf-Zamojski, Frederique, Zhang, Zidong, Zamojski, Michel, Smith, Gregory R., Mendelev, Natalia, Liu, Hanqing, Nudelman, German, Moriwaki, Mika, Pincas, Hanna, Castanon, Rosa Gomez, Nair, Venugopalan D., Seenarine, Nitish, Amper, Mary Anne S., Zhou, Xiang, Ongaro, Luisina, Toufaily, Chirine, Schang, Gauthier, Nery, Joseph R., Bartlett, Anna, Aldridge, Andrew, Jain, Nimisha, Childs, Gwen V., Troyanskaya, Olga G., Ecker, Joseph R., Turgeon, Judith L., Welt, Corrine K., Bernard, Daniel J., Sealfon, Stuart C.
Published in Nature communications (11.05.2021)
Published in Nature communications (11.05.2021)
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Journal Article
Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma
Tome-Garcia, Jessica, Erfani, Parsa, Nudelman, German, Tsankov, Alexander M., Katsyv, Igor, Tejero, Rut, Bin Zhang, Walsh, Martin, Friedel, Roland H., Zaslavsky, Elena, Tsankova, Nadejda M.
Published in Nature communications (01.10.2018)
Published in Nature communications (01.10.2018)
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High resolution annotation of zebrafish transcriptome using long-read sequencing
Nudelman, German, Frasca, Antonio, Kent, Brandon, Sadler, Kirsten C, Sealfon, Stuart C, Walsh, Martin J, Zaslavsky, Elena
Published in Genome research (01.09.2018)
Published in Genome research (01.09.2018)
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Astrocytic TYMP and VEGFA drive blood-brain barrier opening in inflammatory central nervous system lesions
Chapouly, Candice, Tadesse Argaw, Azeb, Horng, Sam, Castro, Kamilah, Zhang, Jingya, Asp, Linnea, Loo, Hannah, Laitman, Benjamin M, Mariani, John N, Straus Farber, Rebecca, Zaslavsky, Elena, Nudelman, German, Raine, Cedric S, John, Gareth R
Published in Brain (London, England : 1878) (01.06.2015)
Published in Brain (London, England : 1878) (01.06.2015)
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Super-resolution Imaging Reveals the Internal Architecture of Nano-sized Syntaxin Clusters
Bar-On, Dana, Wolter, Steve, van de Linde, Sebastian, Heilemann, Mike, Nudelman, German, Nachliel, Esther, Gutman, Menachem, Sauer, Markus, Ashery, Uri
Published in The Journal of biological chemistry (03.08.2012)
Published in The Journal of biological chemistry (03.08.2012)
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Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults
Rubenstein, Aliza B, Hinkley, J Matthew, Nair, Venugopalan D, Nudelman, German, Standley, Robert A, Yi, Fanchao, Yu, GongXin, Trappe, Todd A, Bamman, Marcas M, Trappe, Scott W, Sparks, Lauren M, Goodpaster, Bret H, Vega, Rick B, Sealfon, Stuart C, Zaslavsky, Elena, Coen, Paul M
Published in American journal of physiology: endocrinology and metabolism (01.03.2022)
Published in American journal of physiology: endocrinology and metabolism (01.03.2022)
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Pandemic H1N1 influenza A viruses suppress immunogenic RIPK3-driven dendritic cell death
Hartmann, Boris M., Albrecht, Randy A., Zaslavsky, Elena, Nudelman, German, Pincas, Hanna, Marjanovic, Nada, Schotsaert, Michael, Martínez-Romero, Carles, Fenutria, Rafael, Ingram, Justin P., Ramos, Irene, Fernandez-Sesma, Ana, Balachandran, Siddharth, García-Sastre, Adolfo, Sealfon, Stuart C.
Published in Nature communications (05.12.2017)
Published in Nature communications (05.12.2017)
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A methylation clock model of mild SARS‐CoV‐2 infection provides insight into immune dysregulation
Mao, Weiguang, Miller, Clare M, Nair, Venugopalan D, Ge, Yongchao, Amper, Mary Anne S, Cappuccio, Antonio, George, Mary‐Catherine, Goforth, Carl W, Guevara, Kristy, Marjanovic, Nada, Nudelman, German, Pincas, Hanna, Ramos, Irene, Sealfon, Rachel S G, Soares‐Schanoski, Alessandra, Vangeti, Sindhu, Vasoya, Mital, Weir, Dawn L, Zaslavsky, Elena, Barcessat, Vanessa, Tuballes, Kevin, Del Valle, Diane Marie, Nie, Kai, Xie, Hui, Chung, Grace, Patel, Manishkumar, Harris, Jocelyn, Argueta, Kimberly, Fehr, Jacques, Gruberg, Barr, Zaki, Nicholas, Kim‐Schulze, Seunghee, Gnjatic, Sacha, Merad, Miriam, Letizia, Andrew G, Troyanskaya, Olga G, Sealfon, Stuart C, Chikina, Maria
Published in Molecular systems biology (09.05.2023)
Published in Molecular systems biology (09.05.2023)
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Prototypical oncogene family Myc defines unappreciated distinct lineage states of small cell lung cancer
Patel, Ayushi S, Yoo, Seungyeul, Kong, Ranran, Sato, Takashi, Sinha, Abhilasha, Karam, Sarah, Bao, Li, Fridrikh, Maya, Emoto, Katsura, Nudelman, German, Powell, Charles A, Beasley, Mary Beth, Zhu, Jun, Watanabe, Hideo
Published in Science advances (29.01.2021)
Published in Science advances (29.01.2021)
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Journal Article
High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy
Pai, Balagopal, Tome-Garcia, Jessica, Cheng, Wan Sze, Nudelman, German, Beaumont, Kristin G, Ghatan, Saadi, Panov, Fedor, Caballero, Elodia, Sarpong, Kwadwo, Marcuse, Lara, Yoo, Jiyeoun, Jiang, Yan, Schaefer, Anne, Akbarian, Schahram, Sebra, Robert, Pinto, Dalila, Zaslavsky, Elena, Tsankova, Nadejda M
Published in Acta neuropathologica communications (23.10.2022)
Published in Acta neuropathologica communications (23.10.2022)
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The Transcriptional Activator Krüppel-like Factor-6 Is Required for CNS Myelination
Laitman, Benjamin M, Asp, Linnéa, Mariani, John N, Zhang, Jingya, Liu, Jia, Sawai, Setsu, Chapouly, Candice, Horng, Sam, Kramer, Elisabeth G, Mitiku, Nesanet, Loo, Hannah, Burlant, Natalie, Pedre, Xiomara, Hara, Yuko, Nudelman, German, Zaslavsky, Elena, Lee, Young-Min, Braun, David A, Lu, Q Richard, Narla, Goutham, Raine, Cedric S, Friedman, Scott L, Casaccia, Patrizia, John, Gareth R
Published in PLoS biology (01.05.2016)
Published in PLoS biology (01.05.2016)
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Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses
Nudelman, Irina, Kudrin, Daniil, Nudelman, German, Deshpande, Raamesh, Hartmann, Boris M., Kleinstein, Steven H., Myers, Chad L., Sealfon, Stuart C., Zaslavsky, Elena
Published in Frontiers in immunology (14.07.2021)
Published in Frontiers in immunology (14.07.2021)
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Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone
Ruf-Zamojski, Frederique, Fribourg, Miguel, Ge, Yongchao, Nair, Venugopalan, Pincas, Hanna, Zaslavsky, Elena, Nudelman, German, Tuminello, Stephanie J, Watanabe, Hideo, Turgeon, Judith L, Sealfon, Stuart C
Published in Frontiers in endocrinology (Lausanne) (14.02.2018)
Published in Frontiers in endocrinology (Lausanne) (14.02.2018)
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Getting started in biological pathway construction and analysis
Viswanathan, Ganesh A, Seto, Jeremy, Patil, Sonali, Nudelman, German, Sealfon, Stuart C
Published in PLoS computational biology (01.02.2008)
Published in PLoS computational biology (01.02.2008)
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Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection
Sauerwald, Natalie, Zhang, Zijun, Ramos, Irene, Nair, Venugopalan D., Soares-Schanoski, Alessandra, Ge, Yongchao, Mao, Weiguang, Alshammary, Hala, Gonzalez-Reiche, Ana S., van de Guchte, Adriana, Goforth, Carl W., Lizewski, Rhonda A., Lizewski, Stephen E., Amper, Mary Anne S., Vasoya, Mital, Seenarine, Nitish, Guevara, Kristy, Marjanovic, Nada, Miller, Clare M., Nudelman, German, Schilling, Megan A., Sealfon, Rachel S.G., Termini, Michael S., Vangeti, Sindhu, Weir, Dawn L., Zaslavsky, Elena, Chikina, Maria, Wu, Ying Nian, Van Bakel, Harm, Letizia, Andrew G., Sealfon, Stuart C., Troyanskaya, Olga G.
Published in Cell systems (16.11.2022)
Published in Cell systems (16.11.2022)
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Correction: High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy
Pai, Balagopal, Tome-Garcia, Jessica, Cheng, Wan Sze, Nudelman, German, Beaumont, Kristin G, Ghatan, Saadi, Panov, Fedor, Caballero, Elodia, Sarpong, Kwadwo, Marcuse, Lara, Yoo, Jiyeoun, Jiang, Yan, Schaefer, Anne, Akbarian, Schahram, Sebra, Robert, Pinto, Dalila, Zaslavsky, Elena, Tsankova, Nadejda M
Published in Acta neuropathologica communications (28.11.2022)
Published in Acta neuropathologica communications (28.11.2022)
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Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation
Shimoni, Yishai, Nudelman, German, Hayot, Fernand, Sealfon, Stuart C
Published in PloS one (21.12.2011)
Published in PloS one (21.12.2011)
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Journal Article
Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease
Zhang, Zijun, Sauerwald, Natalie, Cappuccio, Antonio, Ramos, Irene, Nair, Venugopalan D., Nudelman, German, Zaslavsky, Elena, Ge, Yongchao, Gaitas, Angelo, Ren, Hui, Brockman, Joel, Geis, Jennifer, Ramalingam, Naveen, King, David, McClain, Micah T., Woods, Christopher W., Henao, Ricardo, Burke, Thomas W., Tsalik, Ephraim L., Goforth, Carl W., Lizewski, Rhonda A., Lizewski, Stephen E., Weir, Dawn L., Letizia, Andrew G., Sealfon, Stuart C., Troyanskaya, Olga G.
Published in Cell reports methods (27.02.2023)
Published in Cell reports methods (27.02.2023)
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Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells
Hu, Jianzhong, Nudelman, German, Shimoni, Yishai, Kumar, Madhu, Ding, Yaomei, López, Carolina, Hayot, Fernand, Wetmur, James G, Sealfon, Stuart C
Published in PloS one (08.02.2011)
Published in PloS one (08.02.2011)
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