Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J, Brown, C Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E, Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A, Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D, Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R, Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C, Porter, Jacob S, Rasmussen, Simon, Rees, Evan R, Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L, Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Published in Nature methods (01.04.2022)
Published in Nature methods (01.04.2022)
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Experimental infection of pigs and ferrets with "pre-pandemic," human-adapted, and swine-adapted variants of the H1N1pdm09 influenza A virus reveals significant differences in viral dynamics and pathological manifestations
Kristensen, Charlotte, Laybourn, Helena A, Crumpton, Jeri-Carol, Martiny, Karen, Webb, Ashley, Ryt-Hansen, Pia, Trebbien, Ramona, Jensen, Henrik E, Nissen, Jakob N, Skovgaard, Kerstin, Webby, Richard J, Larsen, Lars E
Published in PLoS pathogens (04.12.2023)
Published in PLoS pathogens (04.12.2023)
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Journal Article
Alterations in Cerebral Cortical Glucose and Glutamine Metabolism Precedes Amyloid Plaques in the APPswe/PSEN1dE9 Mouse Model of Alzheimer’s Disease
Andersen, Jens V., Christensen, Sofie K., Aldana, Blanca I., Nissen, Jakob D., Tanila, Heikki, Waagepetersen, Helle S.
Published in Neurochemical research (01.06.2017)
Published in Neurochemical research (01.06.2017)
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Improved cerebral energetics and ketone body metabolism in db/db mice
Andersen, Jens V, Christensen, Sofie K, Nissen, Jakob D, Waagepetersen, Helle S
Published in Journal of cerebral blood flow and metabolism (01.03.2017)
Published in Journal of cerebral blood flow and metabolism (01.03.2017)
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Journal Article
Severe Human Case of Zoonotic Infection with Swine-Origin Influenza A Virus, Denmark, 2021
Andersen, Klara M, Vestergaard, Lasse S, Nissen, Jakob N, George, Sophie J, Ryt-Hansen, Pia, Hjulsager, Charlotte K, Krog, Jesper S, Skov, Marianne N, Alexandersen, Søren, Larsen, Lars E, Trebbien, Ramona
Published in Emerging infectious diseases (01.12.2022)
Published in Emerging infectious diseases (01.12.2022)
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Journal Article
Dysfunctional TCA-Cycle Metabolism in Glutamate Dehydrogenase Deficient Astrocytes
Nissen, Jakob D., Pajęcka, Kamilla, Stridh, Malin H., Skytt, Dorte M., Waagepetersen, Helle S.
Published in Glia (01.12.2015)
Published in Glia (01.12.2015)
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Novel Clade 2.3.4.4b Highly Pathogenic Avian Influenza A H5N8 and H5N5 Viruses in Denmark, 2020
Liang, Yuan, Nissen, Jakob N, Krog, Jesper S, Breum, Solvej Ø, Trebbien, Ramona, Larsen, Lars E, Hjulsager, Charlotte K
Published in Viruses (11.05.2021)
Published in Viruses (11.05.2021)
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Journal Article
Deletion of Neuronal GLT-1 in Mice Reveals Its Role in Synaptic Glutamate Homeostasis and Mitochondrial Function
McNair, Laura F, Andersen, Jens V, Aldana, Blanca I, Hohnholt, Michaela C, Nissen, Jakob D, Sun, Yan, Fischer, Kathryn D, Sonnewald, Ursula, Nyberg, Nils, Webster, Sophie C, Kapur, Kush, Rimmele, Theresa S, Barone, Ilaria, Hawks-Mayer, Hannah, Lipton, Jonathan O, Hodgson, Nathaniel W, Hensch, Takao K, Aoki, Chiye J, Rosenberg, Paul A, Waagepetersen, Helle S
Published in The Journal of neuroscience (19.06.2019)
Published in The Journal of neuroscience (19.06.2019)
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Journal Article
Reassortant Influenza A(H1N1)pdm09 Virus in Elderly Woman, Denmark, January 2021
Nissen, Jakob N, George, Sophie J, Hjulsager, Charlotte K, Krog, Jesper S, Nielsen, Xiaohui C, Madsen, Tina V, Andersen, Klara M, Krause, Tyra G, Vestergaard, Lasse S, Larsen, Lars E, Trebbien, Ramona
Published in Emerging infectious diseases (01.12.2021)
Published in Emerging infectious diseases (01.12.2021)
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Journal Article
Hypermetabolism and impaired endothelium-dependent vasodilation in mesenteric arteries of type 2 diabetes mellitus db/db mice
Arildsen, Lene, Andersen, Jens Velde, Waagepetersen, Helle Soenderby, Nissen, Jakob Borre Dahl, Sheykhzade, Majid
Published in Diabetes & vascular disease research (01.11.2019)
Published in Diabetes & vascular disease research (01.11.2019)
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Journal Article
Metabolic Characterization of Acutely Isolated Hippocampal and Cerebral Cortical Slices Using [U-13C]Glucose and [1,2-13C]Acetate as Substrates
McNair, Laura F., Kornfelt, Rasmus, Walls, Anne B., Andersen, Jens V., Aldana, Blanca I., Nissen, Jakob D., Schousboe, Arne, Waagepetersen, Helle S.
Published in Neurochemical research (01.03.2017)
Published in Neurochemical research (01.03.2017)
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Journal Article
Conditional Knockout of GLT-1 in Neurons Leads to Alterations in Aspartate Homeostasis and Synaptic Mitochondrial Metabolism in Striatum and Hippocampus
McNair, Laura F., Andersen, Jens V., Nissen, Jakob D., Sun, Yan, Fischer, Kathryn D., Hodgson, Nathaniel W., Du, Muzi, Aoki, Chiye J., Waagepetersen, Helle S., Rosenberg, Paul A., Aldana, Blanca I.
Published in Neurochemical research (01.06.2020)
Published in Neurochemical research (01.06.2020)
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Journal Article
Expression of the human isoform of glutamate dehydrogenase, hGDH2, augments TCA cycle capacity and oxidative metabolism of glutamate during glucose deprivation in astrocytes
Nissen, Jakob D., Lykke, Kasper, Bryk, Jaroslaw, Stridh, Malin H., Zaganas, Ioannis, Skytt, Dorte M., Schousboe, Arne, Bak, Lasse K., Enard, Wolfgang, Pääbo, Svante, Waagepetersen, Helle S.
Published in Glia (01.03.2017)
Published in Glia (01.03.2017)
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Journal Article
Glycogen metabolism is impaired in the brain of male type 2 diabetic Goto‐Kakizaki rats
Soares, Ana Francisca, Nissen, Jakob D., Garcia‐Serrano, Alba M., Nussbaum, Sakura S., Waagepetersen, Helle S., Duarte, João M. N.
Published in Journal of neuroscience research (01.08.2019)
Published in Journal of neuroscience research (01.08.2019)
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Journal Article
Taxometer: Improving taxonomic classification of metagenomics contigs
Kutuzova, Svetlana, Nielsen, Mads, Piera, Pau, Nissen, Jakob Nybo, Rasmussen, Simon
Published in Nature communications (27.09.2024)
Published in Nature communications (27.09.2024)
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Journal Article
G-protein-coupled inward rectifier potassium current contributes to ventricular repolarization
Liang, Bo, Nissen, Jakob D, Laursen, Morten, Wang, Xiaodong, Skibsbye, Lasse, Hearing, Matthew C, Andersen, Martin N, Rasmussen, Hanne B, Wickman, Kevin, Grunnet, Morten, Olesen, Søren-Peter, Jespersen, Thomas
Published in Cardiovascular research (01.01.2014)
Published in Cardiovascular research (01.01.2014)
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Journal Article
Genome binning of viral entities from bulk metagenomics data
Johansen, Joachim, Plichta, Damian R, Nissen, Jakob Nybo, Jespersen, Marie Louise, Shah, Shiraz A, Deng, Ling, Stokholm, Jakob, Bisgaard, Hans, Nielsen, Dennis Sandris, Sørensen, Søren J, Rasmussen, Simon
Published in Nature communications (18.02.2022)
Published in Nature communications (18.02.2022)
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Journal Article
AMPK Activation Affects Glutamate Metabolism in Astrocytes
Voss, Caroline M., Pajęcka, Kamilla, Stridh, Malin H., Nissen, Jakob D., Schousboe, Arne, Waagepetersen, Helle S.
Published in Neurochemical research (01.12.2015)
Published in Neurochemical research (01.12.2015)
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Journal Article
Glucose replaces glutamate as energy substrate to fuel glutamate uptake in glutamate dehydrogenase-deficient astrocytes
Pajęcka, Kamilla, Nissen, Jakob D., Stridh, Malin H., Skytt, Dorte M., Schousboe, Arne, Waagepetersen, Helle S.
Published in Journal of neuroscience research (01.07.2015)
Published in Journal of neuroscience research (01.07.2015)
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