SMURF: Genomic mapping of fungal secondary metabolite clusters
Khaldi, Nora, Seifuddin, Fayaz T., Turner, Geoff, Haft, Daniel, Nierman, William C., Wolfe, Kenneth H., Fedorova, Natalie D.
Published in Fungal genetics and biology (01.09.2010)
Published in Fungal genetics and biology (01.09.2010)
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The pH-responsive PacC transcription factor of Aspergillus fumigatus governs epithelial entry and tissue invasion during pulmonary aspergillosis
Bertuzzi, Margherita, Schrettl, Markus, Alcazar-Fuoli, Laura, Cairns, Timothy C, Muñoz, Alberto, Walker, Louise A, Herbst, Susanne, Safari, Maryam, Cheverton, Angela M, Chen, Dan, Liu, Hong, Saijo, Shinobu, Fedorova, Natalie D, Armstrong-James, Darius, Munro, Carol A, Read, Nick D, Filler, Scott G, Espeso, Eduardo A, Nierman, William C, Haas, Hubertus, Bignell, Elaine M
Published in PLoS pathogens (01.10.2014)
Published in PLoS pathogens (01.10.2014)
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Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Espinoza, Josh L, Dupont, Chris L, O'Rourke, Aubrie, Beyhan, Sinem, Morales, Pavel, Spoering, Amy, Meyer, Kirsten J, Chan, Agnes P, Choi, Yongwook, Nierman, William C, Lewis, Kim, Nelson, Karen E
Published in PLoS computational biology (29.03.2021)
Published in PLoS computational biology (29.03.2021)
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Journal Article
Aspergillus galactosaminogalactan mediates adherence to host constituents and conceals hyphal β-glucan from the immune system
Gravelat, Fabrice N, Beauvais, Anne, Liu, Hong, Lee, Mark J, Snarr, Brendan D, Chen, Dan, Xu, Wenjie, Kravtsov, Ilia, Hoareau, Christopher M Q, Vanier, Ghyslaine, Urb, Mirjam, Campoli, Paolo, Al Abdallah, Qusai, Lehoux, Melanie, Chabot, Josée C, Ouimet, Marie-Claude, Baptista, Stefanie D, Fritz, Jörg H, Nierman, William C, Latgé, Jean Paul, Mitchell, Aaron P, Filler, Scott G, Fontaine, Thierry, Sheppard, Donald C
Published in PLoS pathogens (01.08.2013)
Published in PLoS pathogens (01.08.2013)
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Journal Article
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
Joardar, Vinita, Abrams, Natalie F, Hostetler, Jessica, Paukstelis, Paul J, Pakala, Suchitra, Pakala, Suman B, Zafar, Nikhat, Abolude, Olukemi O, Payne, Gary, Andrianopoulos, Alex, Denning, David W, Nierman, William C
Published in BMC genomics (12.12.2012)
Published in BMC genomics (12.12.2012)
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Journal Article
SreA-mediated iron regulation in Aspergillus fumigatus
Schrettl, Markus, Kim, H. Stanley, Eisendle, Martin, Kragl, Claudia, Nierman, William C, Heinekamp, Thorsten, Werner, Ernst R, Jacobsen, Ilse, Illmer, Paul, Yi, Hyojeong, Brakhage, Axel A, Haas, Hubertus
Published in Molecular microbiology (01.10.2008)
Published in Molecular microbiology (01.10.2008)
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Journal Article
Type VI secretion is a major virulence determinant in Burkholderia mallei
Schell, Mark A, Ulrich, Ricky L, Ribot, Wilson J, Brueggemann, Ernst E, Hines, Harry B, Chen, Dan, Lipscomb, Lyla, Kim, H. Stanley, Mrázek, Jan, Nierman, William C, DeShazer, David
Published in Molecular microbiology (01.06.2007)
Published in Molecular microbiology (01.06.2007)
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Journal Article
Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq
Yu, Jiujiang, Fedorova, Natalie D., Montalbano, Beverly G., Bhatnagar, Deepak, Cleveland, Thomas E., Bennett, Joan W., Nierman, William C.
Published in FEMS microbiology letters (01.09.2011)
Published in FEMS microbiology letters (01.09.2011)
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Journal Article
Whole genome comparison of Aspergillus flavus L-morphotype strain NRRL 3357 (type) and S-morphotype strain AF70
Gilbert, Matthew K, Mack, Brian M, Moore, Geromy G, Downey, Darlene L, Lebar, Matthew D, Joardar, Vinita, Losada, Liliana, Yu, JiuJiang, Nierman, William C, Bhatnagar, Deepak
Published in PloS one (02.07.2018)
Published in PloS one (02.07.2018)
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Journal Article
Transcript amplification from single bacterium for transcriptome analysis
Kang, Yun, Norris, Michael H, Zarzycki-Siek, Jan, Nierman, William C, Donachie, Stuart P, Hoang, Tung T
Published in Genome research (01.06.2011)
Published in Genome research (01.06.2011)
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Journal Article
Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing
Manenzhe, Rendani I, Dube, Felix S, Wright, Meredith, Lennard, Katie, Zar, Heather J, Mounaud, Stephanie, Nierman, William C, Nicol, Mark P, Moodley, Clinton
Published in PloS one (22.04.2020)
Published in PloS one (22.04.2020)
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Journal Article
Sub-telomere directed gene expression during initiation of invasive aspergillosis
McDonagh, Andrew, Fedorova, Natalie D, Crabtree, Jonathan, Yu, Yan, Kim, Stanley, Chen, Dan, Loss, Omar, Cairns, Timothy, Goldman, Gustavo, Armstrong-James, Darius, Haynes, Ken, Haas, Hubertus, Schrettl, Markus, May, Gregory, Nierman, William C, Bignell, Elaine
Published in PLoS pathogens (01.09.2008)
Published in PLoS pathogens (01.09.2008)
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Journal Article
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C
Published in PLoS genetics (01.04.2008)
Published in PLoS genetics (01.04.2008)
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Journal Article
Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA
Perrin, Robyn M, Fedorova, Natalie D, Bok, Jin Woo, Cramer, Robert A, Wortman, Jennifer R, Kim, H Stanley, Nierman, William C, Keller, Nancy P
Published in PLoS pathogens (01.04.2007)
Published in PLoS pathogens (01.04.2007)
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Journal Article
Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence
Losada, Liliana, Sugui, Janyce A, Eckhaus, Michael A, Chang, Yun C, Mounaud, Stephanie, Figat, Abigail, Joardar, Vinita, Pakala, Suman B, Pakala, Suchitra, Venepally, Pratap, Fedorova, Natalie, Nierman, William C, Kwon-Chung, Kyung J
Published in PLoS pathogens (01.04.2015)
Published in PLoS pathogens (01.04.2015)
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Journal Article
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort
Claassen-Weitz, Shantelle, Gardner-Lubbe, Sugnet, Xia, Yao, Mwaikono, Kilaza S, Mounaud, Stephanie Harris, Nierman, William C, Workman, Lesley, Zar, Heather J, Nicol, Mark P
Published in Microbiome (05.06.2023)
Published in Microbiome (05.06.2023)
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Journal Article
Transcriptional Profiling Identifies a Role for BrlA in the Response to Nitrogen Depletion and for StuA in the Regulation of Secondary Metabolite Clusters in Aspergillus fumigatus
Twumasi-Boateng, Kwame, Yu, Yan, Chen, Dan, Gravelat, Fabrice N, Nierman, William C, Sheppard, Donald C
Published in Eukaryotic Cell (01.01.2009)
Published in Eukaryotic Cell (01.01.2009)
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Journal Article
The early stage of bacterial genome-reductive evolution in the host
Song, Han, Hwang, Junghyun, Yi, Hyojeong, Ulrich, Ricky L, Yu, Yan, Nierman, William C, Kim, Heenam Stanley
Published in PLoS pathogens (01.05.2010)
Published in PLoS pathogens (01.05.2010)
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Journal Article
HacA-independent functions of the ER stress sensor IreA synergize with the canonical UPR to influence virulence traits in Aspergillus fumigatus
Feng, Xizhi, Krishnan, Karthik, Richie, Daryl L, Aimanianda, Vishukumar, Hartl, Lukas, Grahl, Nora, Powers-Fletcher, Margaret V, Zhang, Minlu, Fuller, Kevin K, Nierman, William C, Lu, Long Jason, Latgé, Jean-Paul, Woollett, Laura, Newman, Simon L, Cramer, Jr, Robert A, Rhodes, Judith C, Askew, David S
Published in PLoS pathogens (01.10.2011)
Published in PLoS pathogens (01.10.2011)
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