Oscillospira and related bacteria – From metagenomic species to metabolic features
Gophna, Uri, Konikoff, Tom, Nielsen, Henrik Bjørn
Published in Environmental microbiology (01.03.2017)
Published in Environmental microbiology (01.03.2017)
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Journal Article
Intercropping of grain legumes and cereals improves the use of soil N resources and reduces the requirement for synthetic fertilizer N: A global-scale analysis
Jensen, Erik Steen, Carlsson, Georg, Hauggaard-Nielsen, Henrik
Published in Agronomy for sustainable development (2020)
Published in Agronomy for sustainable development (2020)
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Journal Article
SignalP 6.0 predicts all five types of signal peptides using protein language models
Teufel, Felix, Almagro Armenteros, José Juan, Johansen, Alexander Rosenberg, Gíslason, Magnús Halldór, Pihl, Silas Irby, Tsirigos, Konstantinos D, Winther, Ole, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik
Published in Nature biotechnology (01.07.2022)
Published in Nature biotechnology (01.07.2022)
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Journal Article
Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism
Duscha, Alexander, Gisevius, Barbara, Hirschberg, Sarah, Yissachar, Nissan, Stangl, Gabriele I., Dawin, Eva, Bader, Verian, Haase, Stefanie, Kaisler, Johannes, David, Christina, Schneider, Ruth, Troisi, Riccardo, Zent, Daniel, Hegelmaier, Tobias, Dokalis, Nikolaos, Gerstein, Sara, Del Mare-Roumani, Sara, Amidror, Sivan, Staszewski, Ori, Poschmann, Gereon, Stühler, Kai, Hirche, Frank, Balogh, Andras, Kempa, Stefan, Träger, Pascal, Zaiss, Mario M., Holm, Jacob Bak, Massa, Megan G., Nielsen, Henrik Bjørn, Faissner, Andreas, Lukas, Carsten, Gatermann, Sören G., Scholz, Markus, Przuntek, Horst, Prinz, Marco, Forslund, Sofia K., Winklhofer, Konstanze F., Müller, Dominik N., Linker, Ralf A., Gold, Ralf, Haghikia, Aiden
Published in Cell (19.03.2020)
Published in Cell (19.03.2020)
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Journal Article
Bioenergy potential of Ulva lactuca: Biomass yield, methane production and combustion
Bruhn, Annette, Dahl, Jonas, Nielsen, Henrik Bangsø, Nikolaisen, Lars, Rasmussen, Michael Bo, Markager, Stiig, Olesen, Birgit, Arias, Carlos, Jensen, Peter Daugbjerg
Published in Bioresource technology (01.02.2011)
Published in Bioresource technology (01.02.2011)
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Journal Article
Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Barah, Pankaj, Jayavelu, Naresh Doni, Rasmussen, Simon, Nielsen, Henrik Bjørn, Mundy, John, Bones, Atle M
Published in BMC genomics (22.10.2013)
Published in BMC genomics (22.10.2013)
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Journal Article
Risk assessment with gut microbiome and metabolite markers in NAFLD development
Leung, Howell, Long, Xiaoxue, Ni, Yueqiong, Qian, Lingling, Nychas, Emmanouil, Siliceo, Sara Leal, Pohl, Dennis, Hanhineva, Kati, Liu, Yan, Xu, Aimin, Nielsen, Henrik B, Belda, Eugeni, Clément, Karine, Loomba, Rohit, Li, Huating, Jia, Weiping, Panagiotou, Gianni
Published in Science translational medicine (08.06.2022)
Published in Science translational medicine (08.06.2022)
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Journal Article
transcriptionally active regions in the genome of Bacillus subtilis
Rasmussen, Simon, Nielsen, Henrik Bjørn, Jarmer, Hanne
Published in Molecular microbiology (01.09.2009)
Published in Molecular microbiology (01.09.2009)
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Journal Article
Improved metagenome binning and assembly using deep variational autoencoders
Nissen, Jakob Nybo, Johansen, Joachim, Allesøe, Rosa Lundbye, Sønderby, Casper Kaae, Armenteros, Jose Juan Almagro, Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, Henrik Bjørn, Petersen, Thomas Nordahl, Winther, Ole, Rasmussen, Simon
Published in Nature biotechnology (01.05.2021)
Published in Nature biotechnology (01.05.2021)
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Journal Article
NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning
Klausen, Michael Schantz, Jespersen, Martin Closter, Nielsen, Henrik, Jensen, Kamilla Kjærgaard, Jurtz, Vanessa Isabell, Sønderby, Casper Kaae, Sommer, Morten Otto Alexander, Winther, Ole, Nielsen, Morten, Petersen, Bent, Marcatili, Paolo
Published in Proteins, structure, function, and bioinformatics (01.06.2019)
Published in Proteins, structure, function, and bioinformatics (01.06.2019)
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Journal Article
A Brief History of Protein Sorting Prediction
Nielsen, Henrik, Tsirigos, Konstantinos D., Brunak, Søren, von Heijne, Gunnar
Published in The Protein Journal (15.06.2019)
Published in The Protein Journal (15.06.2019)
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Journal Article
Metagenomic species profiling using universal phylogenetic marker genes
Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, Rasmussen, Simon, Brunak, Søren, Pedersen, Oluf, Guarner, Francisco, de Vos, Willem M, Wang, Jun, Li, Junhua, Doré, Joël, Ehrlich, S Dusko, Stamatakis, Alexandros, Bork, Peer
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Parasites modulate the gut-microbiome in insects: A proof-of-concept study
Fredensborg, Brian L, Fossdal Í Kálvalíð, Inga, Johannesen, Thor B, Stensvold, C Rune, Nielsen, Henrik V, Kapel, Christian M O
Published in PloS one (14.01.2020)
Published in PloS one (14.01.2020)
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Journal Article
Detecting sequence signals in targeting peptides using deep learning
Almagro Armenteros, Jose Juan, Salvatore, Marco, Emanuelsson, Olof, Winther, Ole, von Heijne, Gunnar, Elofsson, Arne, Nielsen, Henrik
Published in Life science alliance (01.10.2019)
Published in Life science alliance (01.10.2019)
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