Interactions between RNA polymerase and the "core recognition element" counteract pausing
Vvedenskaya, Irina O., Vahedian-Movahed, Hanif, Bird, Jeremy G., Knoblauch, Jared G., Goldman, Seth R., Zhang, Yu, Ebright, Richard H., Nickels, Bryce E.
Published in Science (American Association for the Advancement of Science) (13.06.2014)
Published in Science (American Association for the Advancement of Science) (13.06.2014)
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Journal Article
Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields
Vvedenskaya, Irina O., Zhang, Yuanchao, Goldman, Seth R., Valenti, Anna, Visone, Valeria, Taylor, Deanne M., Ebright, Richard H., Nickels, Bryce E.
Published in Molecular cell (17.12.2015)
Published in Molecular cell (17.12.2015)
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Journal Article
tRNA is a new target for cleavage by a MazF toxin
Schifano, Jason M, Cruz, Jonathan W, Vvedenskaya, Irina O, Edifor, Regina, Ouyang, Ming, Husson, Robert N, Nickels, Bryce E, Woychik, Nancy A
Published in Nucleic acids research (18.02.2016)
Published in Nucleic acids research (18.02.2016)
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Journal Article
Tuning the Decomposition Temperature in Complex Hydrides: Synthesis of a Mixed Alkali Metal Borohydride
Nickels, E. Anne, Jones, Martin Owen, David, William I.F, Johnson, Simon R, Lowton, Rebecca L, Sommariva, Marco, Edwards, Peter P
Published in Angewandte Chemie (International ed.) (31.03.2008)
Published in Angewandte Chemie (International ed.) (31.03.2008)
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Journal Article
Functional determinants of a small protein controlling a broadly conserved bacterial sensor kinase
Yadavalli, Srujana S, Goh, Ted, Carey, Jeffrey N, Malengo, Gabriele, Vellappan, Sangeevan, Nickels, Bryce E, Sourjik, Victor, Goulian, Mark, Yuan, Jing
Published in Journal of bacteriology (01.08.2020)
Published in Journal of bacteriology (01.08.2020)
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Journal Article
XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing
Winkelman, Jared T., Pukhrambam, Chirangini, Vvedenskaya, Irina O., Zhang, Yuanchao, Taylor, Deanne M., Shah, Premal, Ebright, Richard H., Nickels, Bryce E.
Published in Molecular cell (03.09.2020)
Published in Molecular cell (03.09.2020)
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Journal Article
An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3
Schifano, Jason M, Vvedenskaya, Irina O, Knoblauch, Jared G, Ouyang, Ming, Nickels, Bryce E, Woychik, Nancy A
Published in Nature communications (08.04.2014)
Published in Nature communications (08.04.2014)
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Journal Article
NanoRNAs Prime Transcription Initiation In Vivo
Goldman, Seth R., Sharp, Josh S., Vvedenskaya, Irina O., Livny, Jonathan, Dove, Simon L., Nickels, Bryce E.
Published in Molecular cell (24.06.2011)
Published in Molecular cell (24.06.2011)
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Journal Article
Growth-regulating Mycobacterium tuberculosis VapC-mt4 toxin is an isoacceptor-specific tRNase
Cruz, Jonathan W, Sharp, Jared D, Hoffer, Eric D, Maehigashi, Tatsuya, Vvedenskaya, Irina O, Konkimalla, Arvind, Husson, Robert N, Nickels, Bryce E, Dunham, Christine M, Woychik, Nancy A
Published in Nature communications (09.07.2015)
Published in Nature communications (09.07.2015)
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Journal Article
Detection of spacer precursors formed in vivo during primed CRISPR adaptation
Shiriaeva, Anna A, Savitskaya, Ekaterina, Datsenko, Kirill A, Vvedenskaya, Irina O, Fedorova, Iana, Morozova, Natalia, Metlitskaya, Anastasia, Sabantsev, Anton, Nickels, Bryce E, Severinov, Konstantin, Semenova, Ekaterina
Published in Nature communications (10.10.2019)
Published in Nature communications (10.10.2019)
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Journal Article
NUT carcinoma of the mandible in a child: case report and systematic review
Jimenez, C., Stanton, E., Kondra, K., Nickels, E.M., Jacob, L., Shah, R., Hammoudeh, J.A.
Published in International journal of oral and maxillofacial surgery (01.03.2023)
Published in International journal of oral and maxillofacial surgery (01.03.2023)
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Journal Article
Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae
Qiu, Chenxi, Jin, Huiyan, Vvedenskaya, Irina, Llenas, Jordi Abante, Zhao, Tingting, Malik, Indranil, Visbisky, Alex M, Schwartz, Scott L, Cui, Ping, Čabart, Pavel, Han, Kang Hoo, Lai, William K M, Metz, Richard P, Johnson, Charles D, Sze, Sing-Hoi, Pugh, B Franklin, Nickels, Bryce E, Kaplan, Craig D
Published in Genome Biology (02.06.2020)
Published in Genome Biology (02.06.2020)
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Journal Article
Highly efficient 5' capping of mitochondrial RNA with NAD + and NADH by yeast and human mitochondrial RNA polymerase
Bird, Jeremy G, Basu, Urmimala, Kuster, David, Ramachandran, Aparna, Grudzien-Nogalska, Ewa, Towheed, Atif, Wallace, Douglas C, Kiledjian, Megerditch, Temiakov, Dmitry, Patel, Smita S, Ebright, Richard H, Nickels, Bryce E
Published in eLife (12.12.2018)
Published in eLife (12.12.2018)
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Journal Article
Novel Alkali Earth Borohydride Sr(BH4)2 and Borohydride-Chloride Sr(BH4)Cl
Ravnsbæk, D. B, Nickels, E. A, Černý, R, Olesen, C. H, David, W. I. F, Edwards, P. P, Filinchuk, Y, Jensen, T. R
Published in Inorganic chemistry (07.10.2013)
Published in Inorganic chemistry (07.10.2013)
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Journal Article
Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection
Winkelman, Jared T., Vvedenskaya, Irina O., Zhang, Yuanchao, Zhang, Yu, Bird, Jeremy G., Taylor, Deanne M., Gourse, Richard L., Ebright, Richard H., Nickels, Bryce E.
Published in Science (American Association for the Advancement of Science) (04.03.2016)
Published in Science (American Association for the Advancement of Science) (04.03.2016)
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Journal Article
Interaction of CarD with RNA Polymerase Mediates Mycobacterium tuberculosis Viability, Rifampin Resistance, and Pathogenesis
Weiss, Leslie A, Harrison, Phillip G, Nickels, Bryce E, Glickman, Michael S, Campbell, Elizabeth A, Darst, Seth A, Stallings, Christina L
Published in Journal of Bacteriology (01.10.2012)
Published in Journal of Bacteriology (01.10.2012)
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Journal Article
Structural Basis for Bacterial Transcription-Coupled DNA Repair
Deaconescu, Alexandra M., Chambers, Anna L., Smith, Abigail J., Nickels, Bryce E., Hochschild, Ann, Savery, Nigel J., Darst, Seth A.
Published in Cell (10.02.2006)
Published in Cell (10.02.2006)
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