Proteome-wide signatures of function in highly diverged intrinsically disordered regions
Zarin, Taraneh, Strome, Bob, Nguyen Ba, Alex N, Alberti, Simon, Forman-Kay, Julie D, Moses, Alan M
Published in eLife (02.07.2019)
Published in eLife (02.07.2019)
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Journal Article
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
Nguyen Ba, Alex N, Pogoutse, Anastassia, Provart, Nicholas, Moses, Alan M
Published in BMC bioinformatics (29.06.2009)
Published in BMC bioinformatics (29.06.2009)
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Journal Article
Minimum information and guidelines for reporting a multiplexed assay of variant effect
Claussnitzer, Melina, Parikh, Victoria N, Wagner, Alex H, Arbesfeld, Jeremy A, Bult, Carol J, Firth, Helen V, Muffley, Lara A, Nguyen Ba, Alex N, Riehle, Kevin, Roth, Frederick P, Tabet, Daniel, Bolognesi, Benedetta, Glazer, Andrew M, Rubin, Alan F
Published in Genome Biology (19.04.2024)
Published in Genome Biology (19.04.2024)
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Journal Article
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
Nguyen Ba, Alex N, Yeh, Brian J, van Dyk, Dewald, Davidson, Alan R, Andrews, Brenda J, Weiss, Eric L, Moses, Alan M
Published in Science signaling (13.03.2012)
Published in Science signaling (13.03.2012)
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Journal Article
The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism
Gógl, Gergő, Schneider, Kyle D, Yeh, Brian J, Alam, Nashida, Nguyen Ba, Alex N, Moses, Alan M, Hetényi, Csaba, Reményi, Attila, Weiss, Eric L
Published in PLoS biology (01.05.2015)
Published in PLoS biology (01.05.2015)
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Journal Article
Chance and necessity in the pleiotropic consequences of adaptation for budding yeast
Jerison, Elizabeth R, Nguyen Ba, Alex N, Desai, Michael M, Kryazhimskiy, Sergey
Published in Nature ecology & evolution (01.04.2020)
Published in Nature ecology & evolution (01.04.2020)
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Journal Article
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
Liti, Gianni, Nguyen Ba, Alex N, Blythe, Martin, Müller, Carolin A, Bergström, Anders, Cubillos, Francisco A, Dafhnis-Calas, Felix, Khoshraftar, Shima, Malla, Sunir, Mehta, Neel, Siow, Cheuk C, Warringer, Jonas, Moses, Alan M, Louis, Edward J, Nieduszynski, Conrad A
Published in BMC genomics (31.01.2013)
Published in BMC genomics (31.01.2013)
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A high-definition view of functional genetic variation from natural yeast genomes
Bergström, Anders, Simpson, Jared T, Salinas, Francisco, Barré, Benjamin, Parts, Leopold, Zia, Amin, Nguyen Ba, Alex N, Moses, Alan M, Louis, Edward J, Mustonen, Ville, Warringer, Jonas, Durbin, Richard, Liti, Gianni
Published in Molecular biology and evolution (01.04.2014)
Published in Molecular biology and evolution (01.04.2014)
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Journal Article
Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences
Nguyen Ba, Alex N, Strome, Bob, Hua, Jun Jie, Desmond, Jonathan, Gagnon-Arsenault, Isabelle, Weiss, Eric L, Landry, Christian R, Moses, Alan M
Published in PLoS computational biology (01.12.2014)
Published in PLoS computational biology (01.12.2014)
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Journal Article
Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments
Nguyen Ba, Alex N, Strome, Bob, Osman, Selma, Legere, Elizabeth-Ann, Zarin, Taraneh, Moses, Alan M
Published in PLoS genetics (14.04.2017)
Published in PLoS genetics (14.04.2017)
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Journal Article
Microbial experimental evolution in a massively multiplexed and high-throughput era
Jagdish, Tanush, Nguyen Ba, Alex N
Published in Current opinion in genetics & development (01.08.2022)
Published in Current opinion in genetics & development (01.08.2022)
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Journal Article
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library
Youn, Ji-Young, Friesen, Helena, Nguyen Ba, Alex N, Liang, Wendy, Messier, Vincent, Cox, Mike J, Moses, Alan M, Andrews, Brenda
Published in G3 : genes - genomes - genetics (01.03.2017)
Published in G3 : genes - genomes - genetics (01.03.2017)
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Journal Article
Modular epistasis and the compensatory evolution of gene deletion mutants
Rojas Echenique, José I, Kryazhimskiy, Sergey, Nguyen Ba, Alex N, Desai, Michael M
Published in PLoS genetics (15.02.2019)
Published in PLoS genetics (15.02.2019)
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Journal Article
Microwave-Generated Steam Decontamination of N95 Respirators Utilizing Universally Accessible Materials
Zulauf, Katelyn E, Green, Alex B, Nguyen Ba, Alex N, Jagdish, Tanush, Reif, Dvir, Seeley, Robert, Dale, Alana, Kirby, James E
Published in mBio (25.06.2020)
Published in mBio (25.06.2020)
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Journal Article
Barcoded bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast
Nguyen Ba, Alex N, Lawrence, Katherine R, Rego-Costa, Artur, Gopalakrishnan, Shreyas, Temko, Daniel, Michor, Franziska, Desai, Michael M
Published in eLife (11.02.2022)
Published in eLife (11.02.2022)
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Journal Article
High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
Nguyen Ba, Alex N, Cvijović, Ivana, Rojas Echenique, José I, Lawrence, Katherine R, Rego-Costa, Artur, Liu, Xianan, Levy, Sasha F, Desai, Michael M
Published in Nature (London) (01.11.2019)
Published in Nature (London) (01.11.2019)
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