Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics
Kelly, Benjamin J, Fitch, James R, Hu, Yangqiu, Corsmeier, Donald J, Zhong, Huachun, Wetzel, Amy N, Nordquist, Russell D, Newsom, David L, White, Peter
Published in Genome Biology (20.01.2015)
Published in Genome Biology (20.01.2015)
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Journal Article
Fructose-asparagine is a primary nutrient during growth of Salmonella in the inflamed intestine
Ali, Mohamed M, Newsom, David L, González, Juan F, Sabag-Daigle, Anice, Stahl, Christopher, Steidley, Brandi, Dubena, Judith, Dyszel, Jessica L, Smith, Jenee N, Dieye, Yakhya, Arsenescu, Razvan, Boyaka, Prosper N, Krakowka, Steven, Romeo, Tony, Behrman, Edward J, White, Peter, Ahmer, Brian M M
Published in PLoS pathogens (01.06.2014)
Published in PLoS pathogens (01.06.2014)
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Journal Article
EF-P dependent pauses integrate proximal and distal signals during translation
Elgamal, Sara, Katz, Assaf, Hersch, Steven J, Newsom, David, White, Peter, Navarre, William Wiley, Ibba, Michael
Published in PLoS genetics (01.08.2014)
Published in PLoS genetics (01.08.2014)
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Journal Article
ChIP-Seq and RNA-Seq reveal an AmrZ-mediated mechanism for cyclic di-GMP synthesis and biofilm development by Pseudomonas aeruginosa
Jones, Christopher J, Newsom, David, Kelly, Benjamin, Irie, Yasuhiko, Jennings, Laura K, Xu, Binjie, Limoli, Dominique H, Harrison, Joe J, Parsek, Matthew R, White, Peter, Wozniak, Daniel J
Published in PLoS pathogens (01.03.2014)
Published in PLoS pathogens (01.03.2014)
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Journal Article
Blood genome-wide transcriptional profiles reflect broad molecular impairments and strong blood-brain links in Alzheimer's disease
Naughton, Bartholomew J, Duncan, F Jason, Murrey, Darren A, Meadows, Aaron S, Newsom, David E, Stoicea, Nicoleta, White, Peter, Scharre, Douglas W, Mccarty, Douglas M, Fu, Haiyan
Published in Journal of Alzheimer's disease (01.01.2015)
Published in Journal of Alzheimer's disease (01.01.2015)
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Journal Article
Broad Functional Correction of Molecular Impairments by Systemic Delivery of scAAVrh74-hSGSH Gene Delivery in MPS IIIA Mice
Duncan, F Jason, Naughton, Bartholomew J, Zaraspe, Kimberly, Murrey, Darren A, Meadows, Aaron S, Clark, Kelly Reed, Newsom, David E, White, Peter, Fu, Haiyan, McCarty, Douglas M
Published in Molecular therapy (01.04.2015)
Published in Molecular therapy (01.04.2015)
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Journal Article
Innate and adaptive immune activation in the brain of MPS IIIB mouse model
DiRosario, Julianne, Divers, Erin, Wang, Chuansong, Etter, Jonathan, Charrier, Alyssa, Jukkola, Peter, Auer, Herbert, Best, Victoria, Newsom, David L., McCarty, Douglas M., Fu, Haiyan
Published in Journal of neuroscience research (01.03.2009)
Published in Journal of neuroscience research (01.03.2009)
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Journal Article
Use of a targeted, combinatorial next-generation sequencing approach for the study of bicuspid aortic valve
Bonachea, Elizabeth M, Zender, Gloria, White, Peter, Corsmeier, Don, Newsom, David, Fitzgerald-Butt, Sara, Garg, Vidu, McBride, Kim L
Published in BMC medical genomics (26.09.2014)
Published in BMC medical genomics (26.09.2014)
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Journal Article
Expression Profiling Using Affymetrix GeneChip Microarrays
Auer, Herbert, Newsom, David L, Kornacker, Karl
Published in Methods in molecular biology (Clifton, N.J.) (2009)
Published in Methods in molecular biology (Clifton, N.J.) (2009)
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Journal Article
Intrauterine growth restriction is a direct consequence of localized maternal uropathogenic Escherichia coli cystitis
Bolton, Michael, Horvath, Jr, Dennis J, Li, Birong, Cortado, Hanna, Newsom, David, White, Peter, Partida-Sanchez, Santiago, Justice, Sheryl S
Published in PloS one (21.03.2012)
Published in PloS one (21.03.2012)
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Journal Article
Acute physical activity effects on cardiac gene expression
Simonsen, Michelle L., Alessio, Helaine M., White, Peter, Newsom, David L., Hagerman, Ann E.
Published in Experimental physiology (01.11.2010)
Published in Experimental physiology (01.11.2010)
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Journal Article
Phosphatidylinositol 3-Kinase (PI3K) Signaling via Glycogen Synthase Kinase-3 (Gsk-3) Regulates DNA Methylation of Imprinted Loci
Popkie, Anthony P., Zeidner, Leigh C., Albrecht, Ashley M., D'Ippolito, Anthony, Eckardt, Sigrid, Newsom, David E., Groden, Joanna, Doble, Bradley W., Aronow, Bruce, McLaughlin, K. John, White, Peter, Phiel, Christopher J.
Published in The Journal of biological chemistry (31.12.2010)
Published in The Journal of biological chemistry (31.12.2010)
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Journal Article
Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays
Auer, Herbert, Newsom, David L, Nowak, Norma J, McHugh, Kirk M, Singh, Sunita, Yu, Chack-Yung, Yang, Yan, Wenger, Gail D, Gastier-Foster, Julie M, Kornacker, Karl
Published in BMC genomics (30.04.2007)
Published in BMC genomics (30.04.2007)
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Journal Article
Gene copy-number variations (CNVs) of complement C4 and C4A deficiency in genetic risk and pathogenesis of juvenile dermatomyositis
Lintner, Katherine E, Patwardhan, Anjali, Rider, Lisa G, Abdul-Aziz, Rabheh, Wu, Yee Ling, Lundström, Emeli, Padyukov, Leonid, Zhou, Bi, Alhomosh, Alaaedin, Newsom, David, White, Peter, Jones, Karla B, O'Hanlon, Terrance P, Miller, Frederick W, Spencer, Charles H, Yu, Chack Yung
Published in Annals of the rheumatic diseases (01.09.2016)
Published in Annals of the rheumatic diseases (01.09.2016)
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Journal Article
Paediatric electroencephalograph: The benefits of guidelines
Thompson (nee Milner), Brooke E, Newsom, David, White, Andrew
Published in Journal of paediatrics and child health (01.04.2019)
Published in Journal of paediatrics and child health (01.04.2019)
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Journal Article
Energy Efficient Job Co-scheduling for High-Performance Parallel Computing Clusters
Newsom, David K., Serres, Olivier, Azari, Sardar F., Badawy, Abdel-Hameed A., El-Ghazawi, Tarek
Published in 2015 IEEE International Conference on Smart City/SocialCom/SustainCom (SmartCity) (01.12.2015)
Published in 2015 IEEE International Conference on Smart City/SocialCom/SustainCom (SmartCity) (01.12.2015)
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Conference Proceeding
Big Data Techniques for Scalable In-Band and Out-of-Band HPC Energy Measurement
Newsom, David K., Azari, Sardar F., Serres, Olivier, Badawy, Abdel-Hameed A., El-Ghazawi, Tarek
Published in 2015 IEEE International Conference on Smart City/SocialCom/SustainCom (SmartCity) (01.12.2015)
Published in 2015 IEEE International Conference on Smart City/SocialCom/SustainCom (SmartCity) (01.12.2015)
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Conference Proceeding
EF-P Dependent Pauses Integrate Proximal and Distal Signals during Translation: e1004553
Elgamal, Sara, Katz, Assaf, Hersch, Steven J, Newsom, David, White, Peter, Navarre, William Wiley, Ibba, Michael
Published in PLoS genetics (01.08.2014)
Published in PLoS genetics (01.08.2014)
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