TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species
Kirmaier, Andrea, Wu, Fan, Newman, Ruchi M, Hall, Laura R, Morgan, Jennifer S, O'Connor, Shelby, Marx, Preston A, Meythaler, Mareike, Goldstein, Simoy, Buckler-White, Alicia, Kaur, Amitinder, Hirsch, Vanessa M, Johnson, Welkin E
Published in PLoS biology (01.08.2010)
Published in PLoS biology (01.08.2010)
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Journal Article
Evolution of a TRIM5-CypA splice isoform in old world monkeys
Newman, Ruchi M, Hall, Laura, Kirmaier, Andrea, Pozzi, Lu-Ann, Pery, Erez, Farzan, Michael, O'Neil, Shawn P, Johnson, Welkin
Published in PLoS pathogens (01.02.2008)
Published in PLoS pathogens (01.02.2008)
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Journal Article
History and genomic sequence analysis of the herpes simplex virus 1 KOS and KOS1.1 sub-strains
Colgrove, Robert C, Liu, Xueqiao, Griffiths, Anthony, Raja, Priya, Deluca, Neal A, Newman, Ruchi M, Coen, Donald M, Knipe, David M
Published in Virology (New York, N.Y.) (01.01.2016)
Published in Virology (New York, N.Y.) (01.01.2016)
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Journal Article
Gp41-targeted antibodies restore infectivity of a fusion-deficient HIV-1 envelope glycoprotein
Joshi, Vinita R, Newman, Ruchi M, Pack, Melissa L, Power, Karen A, Munro, James B, Okawa, Ken, Madani, Navid, Sodroski, Joseph G, Schmidt, Aaron G, Allen, Todd M
Published in PLoS pathogens (01.05.2020)
Published in PLoS pathogens (01.05.2020)
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Journal Article
Balancing Selection and the Evolution of Functional Polymorphism in Old World Monkey TRIM5α
Newman, Ruchi M., Hall, Laura, Connole, Michelle, Chen, Guo-Lin, Sato, Shuji, Yuste, Eloisa, Diehl, William, Hunter, Eric, Kaur, Amitinder, Miller, Gregory M., Johnson, Welkin E.
Published in Proceedings of the National Academy of Sciences - PNAS (12.12.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (12.12.2006)
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Journal Article
Whole Genome Pyrosequencing of Rare Hepatitis C Virus Genotypes Enhances Subtype Classification and Identification of Naturally Occurring Drug Resistance Variants
Newman, Ruchi M., Kuntzen, Thomas, Weiner, Brian, Berical, Andrew, Charlebois, Patrick, Kuiken, Carla, Murphy, Donald G., Simmonds, Peter, Bennett, Phil, Lennon, Niall J., Birren, Bruce W., Zody, Michael C., Allen, Todd M., Henn, Matthew R.
Published in The Journal of infectious diseases (01.07.2013)
Published in The Journal of infectious diseases (01.07.2013)
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Journal Article
Gain-of-sensitivity mutations in a Trim5-resistant primary isolate of pathogenic SIV identify two independent conserved determinants of Trim5α specificity
McCarthy, Kevin R, Schmidt, Aaron G, Kirmaier, Andrea, Wyand, Allison L, Newman, Ruchi M, Johnson, Welkin E
Published in PLoS pathogens (01.05.2013)
Published in PLoS pathogens (01.05.2013)
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Journal Article
Rhesus Macaque TRIM5 Alleles Have Divergent Antiretroviral Specificities
Wilson, Sam J, Webb, Benjamin L J, Maplanka, Charlotte, Newman, Ruchi M, Verschoor, Ernst J, Heeney, Jonathan L, Towers, Greg J
Published in Journal of Virology (01.07.2008)
Published in Journal of Virology (01.07.2008)
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Journal Article
Structural topology defines protective CD8 + T cell epitopes in the HIV proteome
Gaiha, Gaurav D, Rossin, Elizabeth J, Urbach, Jonathan, Landeros, Christian, Collins, David R, Nwonu, Chioma, Muzhingi, Itai, Anahtar, Melis N, Waring, Olivia M, Piechocka-Trocha, Alicja, Waring, Michael, Worrall, Daniel P, Ghebremichael, Musie S, Newman, Ruchi M, Power, Karen A, Allen, Todd M, Chodosh, James, Walker, Bruce D
Published in Science (American Association for the Advancement of Science) (03.05.2019)
Published in Science (American Association for the Advancement of Science) (03.05.2019)
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Journal Article
Functional impairment of HIV-specific CD8+ T cells precedes aborted spontaneous control of viremia
Collins, David R., Urbach, Jonathan M., Racenet, Zachary J., Arshad, Umar, Power, Karen A., Newman, Ruchi M., Mylvaganam, Geetha H., Ly, Ngoc L., Lian, Xiaodong, Rull, Anna, Rassadkina, Yelizaveta, Yanez, Adrienne G., Peluso, Michael J., Deeks, Steven G., Vidal, Francesc, Lichterfeld, Mathias, Yu, Xu G., Gaiha, Gaurav D., Allen, Todd M., Walker, Bruce D.
Published in Immunity (Cambridge, Mass.) (12.10.2021)
Published in Immunity (Cambridge, Mass.) (12.10.2021)
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Journal Article
A VRC13-like bNAb response is associated with complex escape pathways in HIV-1 envelope
Joshi, Vinita R, Claiborne, Daniel T, Pack, Melissa L, Power, Karen A, Newman, Ruchi M, Batorsky, Rebecca, Bean, David J, Goroff, Matthew S, Lingwood, Daniel, Seaman, Michael S, Rosenberg, Eric, Allen, Todd M
Published in Journal of virology (19.03.2024)
Published in Journal of virology (19.03.2024)
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Journal Article
Protective Efficacy of Broadly Neutralizing Antibodies with Incomplete Neutralization Activity against Simian-Human Immunodeficiency Virus in Rhesus Monkeys
Julg, Boris, Sok, Devin, Schmidt, Stephen D, Abbink, Peter, Newman, Ruchi M, Broge, Thomas, Linde, Caitlyn, Nkolola, Joseph, Le, Khoa, Su, David, Torabi, Julia, Pack, Melissa, Pegu, Amarendra, Allen, Todd M, Mascola, John R, Burton, Dennis R, Barouch, Dan H
Published in Journal of virology (15.10.2017)
Published in Journal of virology (15.10.2017)
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Journal Article
Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2
Newman, Ruchi M, Lamers, Susanna L, Weiner, Brian, Ray, Stuart C, Colgrove, Robert C, Diaz, Fernando, Jing, Lichen, Wang, Kening, Saif, Sakina, Young, Sarah, Henn, Matthew, Laeyendecker, Oliver, Tobian, Aaron A R, Cohen, Jeffrey I, Koelle, David M, Quinn, Thomas C, Knipe, David M
Published in Journal of virology (01.08.2015)
Published in Journal of virology (01.08.2015)
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Journal Article
Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment
Di Giallonardo, Francesca, Geoghegan, Jemma L, Docherty, Douglas E, McLean, Robert G, Zody, Michael C, Qu, James, Yang, Xiao, Birren, Bruce W, Malboeuf, Christine M, Newman, Ruchi M, Ip, Hon S, Holmes, Edward C
Published in Journal of virology (15.01.2016)
Published in Journal of virology (15.01.2016)
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Journal Article
Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins
Lamers, Susanna L, Newman, Ruchi M, Laeyendecker, Oliver, Tobian, Aaron A R, Colgrove, Robert C, Ray, Stuart C, Koelle, David M, Cohen, Jeffrey, Knipe, David M, Quinn, Thomas C
Published in Journal of virology (01.08.2015)
Published in Journal of virology (01.08.2015)
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Journal Article
Genotype-specific variation in West Nile virus dispersal in California
Duggal, Nisha K, Reisen, William K, Fang, Ying, Newman, Ruchi M, Yang, Xiao, Ebel, Gregory D, Brault, Aaron C
Published in Virology (New York, N.Y.) (01.11.2015)
Published in Virology (New York, N.Y.) (01.11.2015)
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Journal Article
Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data
Macalalad, Alexander R, Zody, Michael C, Charlebois, Patrick, Lennon, Niall J, Newman, Ruchi M, Malboeuf, Christine M, Ryan, Elizabeth M, Boutwell, Christian L, Power, Karen A, Brackney, Doug E, Pesko, Kendra N, Levin, Joshua Z, Ebel, Gregory D, Allen, Todd M, Birren, Bruce W, Henn, Matthew R
Published in PLoS computational biology (01.03.2012)
Published in PLoS computational biology (01.03.2012)
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Journal Article
Internally deleted WNV genomes isolated from exotic birds in New Mexico: Function in cells, mosquitoes, and mice
Pesko, Kendra N, Fitzpatrick, Kelly A, Ryan, Elizabeth M, Shi, Pei-Yong, Zhang, Bo, Lennon, Niall J, Newman, Ruchi M, Henn, Matthew R, Ebel, Gregory D
Published in Virology (New York, N.Y.) (25.05.2012)
Published in Virology (New York, N.Y.) (25.05.2012)
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Journal Article
Dengue Virus Evades AAV-Mediated Neutralizing Antibody Prophylaxis in Rhesus Monkeys
Magnani, Diogo M., Ricciardi, Michael J., Bailey, Varian K., Gutman, Martin J., Pedreño-Lopez, Núria, Silveira, Cassia G.T., Maxwell, Helen S., Domingues, Aline, Gonzalez-Nieto, Lucas, Su, Qin, Newman, Ruchi M., Pack, Melissa, Martins, Mauricio A., Martinez-Navio, José M., Fuchs, Sebastian P., Rakasz, Eva G., Allen, Todd M., Whitehead, Stephen S., Burton, Dennis R., Gao, Guangping, Desrosiers, Ronald C., Kallas, Esper G., Watkins, David I.
Published in Molecular therapy (04.10.2017)
Published in Molecular therapy (04.10.2017)
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