Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
Lazar, Nathan H, Nevonen, Kimberly A, O'Connell, Brendan, McCann, Christine, O'Neill, Rachel J, Green, Richard E, Meyer, Thomas J, Okhovat, Mariam, Carbone, Lucia
Published in Genome research (01.07.2018)
Published in Genome research (01.07.2018)
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Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion
Daughtry, Brittany L, Rosenkrantz, Jimi L, Lazar, Nathan H, Fei, Suzanne S, Redmayne, Nash, Torkenczy, Kristof A, Adey, Andrew, Yan, Melissa, Gao, Lina, Park, Byung, Nevonen, Kimberly A, Carbone, Lucia, Chavez, Shawn L
Published in Genome research (01.03.2019)
Published in Genome research (01.03.2019)
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Journal Article
Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha
Hardin, Aaron, Nevonen, Kimberly A, Eckalbar, Walter L, Carbone, Lucia, Ahituv, Nadav
Published in Molecular biology and evolution (01.12.2019)
Published in Molecular biology and evolution (01.12.2019)
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Journal Article
TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function
Okhovat, Mariam, VanCampen, Jake, Nevonen, Kimberly A., Harshman, Lana, Li, Weiyu, Layman, Cora E., Ward, Samantha, Herrera, Jarod, Wells, Jackson, Sheng, Rory R., Mao, Yafei, Ndjamen, Blaise, Lima, Ana C., Vigh-Conrad, Katinka A., Stendahl, Alexandra M., Yang, Ran, Fedorov, Lev, Matthews, Ian R., Easow, Sarah A., Chan, Dylan K., Jan, Taha A., Eichler, Evan E., Rugonyi, Sandra, Conrad, Donald F., Ahituv, Nadav, Carbone, Lucia
Published in Nature communications (07.12.2023)
Published in Nature communications (07.12.2023)
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Journal Article
Transcriptomic and epigenomic characterization of the developing bat wing
Eckalbar, Walter L, Schlebusch, Stephen A, Mason, Mandy K, Gill, Zoe, Parker, Ash V, Booker, Betty M, Nishizaki, Sierra, Muswamba-Nday, Christiane, Terhune, Elizabeth, Nevonen, Kimberly A, Makki, Nadja, Friedrich, Tara, VanderMeer, Julia E, Pollard, Katherine S, Carbone, Lucia, Wall, Jeff D, Illing, Nicola, Ahituv, Nadav
Published in Nature genetics (01.05.2016)
Published in Nature genetics (01.05.2016)
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Journal Article
DNA Methylation Analysis of Turner Syndrome BAV
Gutierrez, Jacob, Davis, Brett A, Nevonen, Kimberly A, Ward, Samantha, Carbone, Lucia, Maslen, Cheryl L
Published in Frontiers in genetics (31.05.2022)
Published in Frontiers in genetics (31.05.2022)
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Journal Article
Age-Associated DNA Methylation Patterns Are Shared Between the Hippocampus and Peripheral Blood Cells
Harris, Christopher J, Davis, Brett A, Zweig, Jonathan A, Nevonen, Kimberly A, Quinn, Joseph F, Carbone, Lucia, Gray, Nora E
Published in Frontiers in genetics (06.03.2020)
Published in Frontiers in genetics (06.03.2020)
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Journal Article
Genomewide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons
Wall, Jeffrey D., Schlebusch, Stephen A., Alberts, Susan C., Cox, Laura A., Snyder-Mackler, Noah, Nevonen, Kimberly A., Carbone, Lucia, Tung, Jenny
Published in Molecular ecology (01.07.2016)
Published in Molecular ecology (01.07.2016)
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Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice
Kundu, Payel, Torres, Eileen Ruth S., Stagaman, Keaton, Kasschau, Kristin, Okhovat, Mariam, Holden, Sarah, Ward, Samantha, Nevonen, Kimberly A., Davis, Brett A., Saito, Takashi, Saido, Takaomi C., Carbone, Lucia, Sharpton, Thomas J., Raber, Jacob
Published in Scientific reports (25.02.2021)
Published in Scientific reports (25.02.2021)
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Journal Article
High-throughput methylome analysis reveals differential methylation for early and late onset preeclampsia for mothers and their children
Layman, Cora E, Ward, Samantha, Davis, Brett A, Nevonen, Kimberly A, Okhovat, Mariam, Rincon, Monica, Valent, Amy, Carbone, Lucia, Thornburg, Kent L
Published in Physiological genomics (01.03.2024)
Published in Physiological genomics (01.03.2024)
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Journal Article
Grandmaternal allergen sensitization reprograms epigenetic and airway responses to allergen in second-generation offspring
Lebold, Katie M, Cook, Madeline, Pincus, Alexandra B, Nevonen, Kimberly A, Davis, Brett A, Carbone, Lucia, Calco, Gina N, Pierce, Aubrey B, Proskocil, Becky J, Fryer, Allison D, Jacoby, David B, Drake, Matthew G
Published in American journal of physiology. Lung cellular and molecular physiology (01.12.2023)
Published in American journal of physiology. Lung cellular and molecular physiology (01.12.2023)
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Journal Article
Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates
Carbone, Lucia, Davis, Brett A., Fei, Suzanne S., White, Ashley, Nevonen, Kimberly A., Takahashi, Diana, Vinson, Amanda, True, Cadence, Roberts, Charles T., Varlamov, Oleg
Published in Scientific reports (17.12.2019)
Published in Scientific reports (17.12.2019)
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Journal Article
Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome
Okhovat, Mariam, Nevonen, Kimberly A., Davis, Brett A., Michener, Pryce, Ward, Samantha, Milhaven, Mark, Harshman, Lana, Sohota, Ajuni, Fernandes, Jason D., Salama, Sofie R., O’Neill, Rachel J., Ahituv, Nadav, Veeramah, Krishna R., Carbonea, Lucia
Published in Proceedings of the National Academy of Sciences - PNAS (11.08.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (11.08.2020)
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Journal Article
Gene-Specific DNA Methylation Linked to Postoperative Cognitive Dysfunction in Apolipoprotein E3 and E4 Mice
Schenning, Katie J, Holden, Sarah, Davis, Brett A, Mulford, Amelia, Nevonen, Kimberly A, Quinn, Joseph F, Raber, Jacob, Carbone, Lucia, Alkayed, Nabil J
Published in Journal of Alzheimer's disease (01.01.2021)
Published in Journal of Alzheimer's disease (01.01.2021)
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Somatic retrotransposition in the developing rhesus macaque brain
Billon, Victor, Sanchez-Luque, Francisco J, Rasmussen, Jay, Bodea, Gabriela O, Gerhardt, Daniel J, Gerdes, Patricia, Cheetham, Seth W, Schauer, Stephanie N, Ajjikuttira, Prabha, Meyer, Thomas J, Layman, Cora E, Nevonen, Kimberly A, Jansz, Natasha, Garcia-Perez, Jose L, Richardson, Sandra R, Ewing, Adam D, Carbone, Lucia, Faulkner, Geoffrey J
Published in Genome research (01.07.2022)
Published in Genome research (01.07.2022)
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Journal Article
The Flow of the Gibbon LAVA Element Is Facilitated by the LINE-1 Retrotransposition Machinery
Meyer, Thomas J, Held, Ulrike, Nevonen, Kimberly A, Klawitter, Sabine, Pirzer, Thomas, Carbone, Lucia, Schumann, Gerald G
Published in Genome biology and evolution (01.10.2016)
Published in Genome biology and evolution (01.10.2016)
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Journal Article
Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation
Bimber, Benjamin N, Raboin, Michael J, Letaw, John, Nevonen, Kimberly A, Spindel, Jennifer E, McCouch, Susan R, Cervera-Juanes, Rita, Spindel, Eliot, Carbone, Lucia, Ferguson, Betsy, Vinson, Amanda
Published in BMC genomics (24.08.2016)
Published in BMC genomics (24.08.2016)
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Journal Article
Deletion of an evolutionarily conserved TAD boundary compromises spermatogenesis in mice
Lima, Ana C, Okhovat, Mariam, Stendahl, Alexandra M, VanCampen, Jake, Nevonen, Kimberly A, Herrera, Jarod, Li, Weiyu, Harshman, Lana, Yang, Ran, Fedorov, Lev M, Vigh-Conrad, Katinka A, Ahituv, Nadav, Conrad, Donald F, Carbone, Lucia
Published in bioRxiv (10.07.2024)
Published in bioRxiv (10.07.2024)
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Journal Article
TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function
Okhovat, Mariam, VanCampen, Jake, Lima, Ana C, Nevonen, Kimberly A, Layman, Cora E, Ward, Samantha, Herrera, Jarod, Stendahl, Alexandra M, Yang, Ran, Harshman, Lana, Li, Weiyu, Sheng, Rory R, Mao, Yafei, Fedorov, Lev, Ndjamen, Blaise, Vigh-Conrad, Katinka A, Matthews, Ian R, Easow, Sarah A, Chan, Dylan K, Jan, Taha A, Eichler, Evan E, Rugonyi, Sandra, Conrad, Donald F, Ahituv, Nadav, Carbone, Lucia
Published in bioRxiv : the preprint server for biology (07.03.2023)
Published in bioRxiv : the preprint server for biology (07.03.2023)
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Gibbon genome and the fast karyotype evolution of small apes
Carbone, Lucia, Alan Harris, R., Gnerre, Sante, Veeramah, Krishna R., Lorente-Galdos, Belen, Huddleston, John, Meyer, Thomas J., Herrero, Javier, Roos, Christian, Aken, Bronwen, Anaclerio, Fabio, Archidiacono, Nicoletta, Baker, Carl, Barrell, Daniel, Batzer, Mark A., Beal, Kathryn, Blancher, Antoine, Bohrson, Craig L., Brameier, Markus, Campbell, Michael S., Capozzi, Oronzo, Casola, Claudio, Chiatante, Giorgia, Cree, Andrew, Damert, Annette, de Jong, Pieter J., Dumas, Laura, Fernandez-Callejo, Marcos, Flicek, Paul, Fuchs, Nina V., Gut, Ivo, Gut, Marta, Hahn, Matthew W., Hernandez-Rodriguez, Jessica, Hillier, LaDeana W., Hubley, Robert, Ianc, Bianca, Izsvák, Zsuzsanna, Jablonski, Nina G., Johnstone, Laurel M., Karimpour-Fard, Anis, Konkel, Miriam K., Kostka, Dennis, Lazar, Nathan H., Lee, Sandra L., Lewis, Lora R., Liu, Yue, Locke, Devin P., Mallick, Swapan, Mendez, Fernando L., Muffato, Matthieu, Nazareth, Lynne V., Nevonen, Kimberly A., O’Bleness, Majesta, Ochis, Cornelia, Odom, Duncan T., Pollard, Katherine S., Quilez, Javier, Reich, David, Rocchi, Mariano, Schumann, Gerald G., Searle, Stephen, Sikela, James M., Skollar, Gabriella, Smit, Arian, Sonmez, Kemal, Hallers, Boudewijn ten, Terhune, Elizabeth, Thomas, Gregg W. C., Ullmer, Brygg, Ventura, Mario, Walker, Jerilyn A., Wall, Jeffrey D., Walter, Lutz, Ward, Michelle C., Wheelan, Sarah J., Whelan, Christopher W., White, Simon, Wilhelm, Larry J., Woerner, August E., Yandell, Mark, Zhu, Baoli, Hammer, Michael F., Marques-Bonet, Tomas, Eichler, Evan E., Fulton, Lucinda, Fronick, Catrina, Muzny, Donna M., Warren, Wesley C., Worley, Kim C., Rogers, Jeffrey, Wilson, Richard K., Gibbs, Richard A.
Published in Nature (London) (11.09.2014)
Published in Nature (London) (11.09.2014)
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