Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data
Wang, Tianyu, Li, Boyang, Nelson, Craig E, Nabavi, Sheida
Published in BMC bioinformatics (18.01.2019)
Published in BMC bioinformatics (18.01.2019)
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Journal Article
Microbial diversity and the lability of dissolved organic carbon
Nelson, Craig E., Wear, Emma K.
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
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Journal Article
Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity
Haas, Andreas F, Nelson, Craig E, Wegley Kelly, Linda, Carlson, Craig A, Rohwer, Forest, Leichter, James J, Wyatt, Alex, Smith, Jennifer E
Published in PloS one (18.11.2011)
Published in PloS one (18.11.2011)
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Journal Article
Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages
Nelson, Craig E, Goldberg, Stuart J, Wegley Kelly, Linda, Haas, Andreas F, Smith, Jennifer E, Rohwer, Forest, Carlson, Craig A
Published in The ISME Journal (01.05.2013)
Published in The ISME Journal (01.05.2013)
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Journal Article
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
Kelly, Linda W., Williams, Gareth J., Barott, Katie L., Carlson, Craig A., Dinsdale, Elizabeth A., Edwards, Robert A., Haas, Andreas F., Haynes, Matthew, Lim, Yan Wei, McDole, Tracey, Nelson, Craig E., Sala, Enric, Sandin, Stuart A., Smith, Jennifer E., Vermeij, Mark J. A., Youle, Merry, Rohwer, Forest
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2014)
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Journal Article
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
Huang, Yvonne J., MD, Nelson, Craig E., PhD, Brodie, Eoin L., PhD, DeSantis, Todd Z., MS, Baek, Marshall S., BS, Liu, Jane, MS, Woyke, Tanja, PhD, Allgaier, Martin, PhD, Bristow, Jim, MD, Wiener-Kronish, Jeanine P., MD, Sutherland, E. Rand, MD, MPH, King, Tonya S., PhD, Icitovic, Nikolina, MAS, Martin, Richard J., MD, Calhoun, William J., MD, Castro, Mario, MD, Denlinger, Loren C., MD, PhD, DiMango, Emily, MD, Kraft, Monica, MD, Peters, Stephen P., MD, PhD, Wasserman, Stephen I., MD, Wechsler, Michael E., MD, Boushey, Homer A., MD, Lynch, Susan V., PhD
Published in Journal of allergy and clinical immunology (01.02.2011)
Published in Journal of allergy and clinical immunology (01.02.2011)
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Journal Article
The effects of food stoichiometry and temperature on copepods are mediated by ontogeny
Mathews, Lauren, Faithfull, Carolyn L., Lenz, Petra H., Nelson, Craig E.
Published in Oecologia (01.09.2018)
Published in Oecologia (01.09.2018)
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Journal Article
Distinct bacterial communities in tropical island aquifers
Kirs, Marek, Kisand, Veljo, Nelson, Craig E, Dudoit, Tineill, Moravcik, Philip S
Published in PloS one (30.04.2020)
Published in PloS one (30.04.2020)
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Journal Article
Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom
Wear, Emma K., Carlson, Craig A., James, Anna K., Brzezinski, Mark A., Windecker, Laura A., Nelson, Craig E.
Published in Limnology and oceanography (01.03.2015)
Published in Limnology and oceanography (01.03.2015)
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Journal Article
Fluorescent dissolved organic matter as a multivariate biogeochemical tracer of submarine groundwater discharge in coral reef ecosystems
Nelson, Craig E., Donahue, Megan J., Dulaiova, Henrieta, Goldberg, Stuart J., La Valle, Florybeth F., Lubarsky, Katie, Miyano, Justin, Richardson, Christina, Silbiger, Nyssa J., Thomas, Florence I.M.
Published in Marine chemistry (20.12.2015)
Published in Marine chemistry (20.12.2015)
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Journal Article
Neurochemical Heterogeneity Among Lateral Hypothalamic Hypocretin/Orexin and Melanin-Concentrating Hormone Neurons Identified Through Single-Cell Gene Expression Analysis
Mickelsen, Laura E, Kolling, 4th, Fredrick W, Chimileski, Brock R, Fujita, Akie, Norris, Carol, Chen, Kun, Nelson, Craig E, Jackson, Alexander C
Published in eNeuro (01.09.2017)
Published in eNeuro (01.09.2017)
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Journal Article
Diel population and functional synchrony of microbial communities on coral reefs
Kelly, Linda Wegley, Nelson, Craig E, Haas, Andreas F, Naliboff, Douglas S, Calhoun, Sandi, Carlson, Craig A, Edwards, Robert A, Fox, Michael D, Hatay, Mark, Johnson, Maggie D, Kelly, Emily L A, Lim, Yan Wei, Macherla, Saichetana, Quinlan, Zachary A, Silva, Genivaldo Gueiros Z, Vermeij, Mark J A, Zgliczynski, Brian, Sandin, Stuart A, Smith, Jennifer E, Rohwer, Forest
Published in Nature communications (12.04.2019)
Published in Nature communications (12.04.2019)
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Journal Article
High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter
Petras, Daniel, Koester, Irina, Da Silva, Ricardo, Stephens, Brandon M., Haas, Andreas F., Nelson, Craig E., Kelly, Linda W., Aluwihare, Lihini I., Dorrestein, Pieter C.
Published in Frontiers in Marine Science (12.12.2017)
Published in Frontiers in Marine Science (12.12.2017)
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Journal Article
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish
Oliver, Aaron, Podell, Sheila, Wegley Kelly, Linda, Sparagon, Wesley J, Plominsky, Alvaro M, Nelson, Robert S, Laurens, Lieve M L, Augyte, Simona, Sims, Neil A, Nelson, Craig E, Allen, Eric E
Published in mBio (08.05.2024)
Published in mBio (08.05.2024)
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Journal Article
Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem
Nelson, Craig E, Alldredge, Alice L, McCliment, Elizabeth A, Amaral-Zettler, Linda A, Carlson, Craig A
Published in The ISME Journal (01.08.2011)
Published in The ISME Journal (01.08.2011)
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Journal Article
Linking diel patterns in community respiration to bacterioplankton in an oligotrophic high-elevation lake
Sadro, Steven, Nelson, Craig E., Melack, John M.
Published in Limnology and oceanography (01.03.2011)
Published in Limnology and oceanography (01.03.2011)
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Journal Article
Species-Specific Differences in the Microbiomes and Organic Exudates of Crustose Coralline Algae Influence Bacterioplankton Communities
Quinlan, Zachary A., Ritson-Williams, Raphael, Carroll, Brenna J., Carlson, Craig A., Nelson, Craig E.
Published in Frontiers in microbiology (08.11.2019)
Published in Frontiers in microbiology (08.11.2019)
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Journal Article