OLGenie: Estimating Natural Selection to Predict Functional Overlapping Genes
Nelson, Chase W, Ardern, Zachary, Wei, Xinzhu
Published in Molecular biology and evolution (01.08.2020)
Published in Molecular biology and evolution (01.08.2020)
Get full text
Journal Article
HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis
Mirabello, Lisa, Yeager, Meredith, Yu, Kai, Clifford, Gary M., Xiao, Yanzi, Zhu, Bin, Cullen, Michael, Boland, Joseph F., Wentzensen, Nicolas, Nelson, Chase W., Raine-Bennett, Tina, Chen, Zigui, Bass, Sara, Song, Lei, Yang, Qi, Steinberg, Mia, Burdett, Laurie, Dean, Michael, Roberson, David, Mitchell, Jason, Lorey, Thomas, Franceschi, Silvia, Castle, Philip E., Walker, Joan, Zuna, Rosemary, Kreimer, Aimée R., Beachler, Daniel C., Hildesheim, Allan, Gonzalez, Paula, Porras, Carolina, Burk, Robert D., Schiffman, Mark
Published in Cell (07.09.2017)
Published in Cell (07.09.2017)
Get full text
Journal Article
Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic
Nelson, Chase W, Ardern, Zachary, Goldberg, Tony L, Meng, Chen, Kuo, Chen-Hao, Ludwig, Christina, Kolokotronis, Sergios-Orestis, Wei, Xinzhu
Published in eLife (01.10.2020)
Published in eLife (01.10.2020)
Get full text
Journal Article
Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution
Jungreis, Irwin, Nelson, Chase W., Ardern, Zachary, Finkel, Yaara, Krogan, Nevan J., Sato, Kei, Ziebuhr, John, Stern-Ginossar, Noam, Pavesi, Angelo, Firth, Andrew E., Gorbalenya, Alexander E., Kellis, Manolis
Published in Virology (New York, N.Y.) (01.06.2021)
Published in Virology (New York, N.Y.) (01.06.2021)
Get full text
Journal Article
The Intersection of HPV Epidemiology, Genomics and Mechanistic Studies of HPV-Mediated Carcinogenesis
Mirabello, Lisa, Clarke, Megan A, Nelson, Chase W, Dean, Michael, Wentzensen, Nicolas, Yeager, Meredith, Cullen, Michael, Boland, Joseph F, Schiffman, Mark, Burk, Robert D
Published in Viruses (13.02.2018)
Published in Viruses (13.02.2018)
Get full text
Journal Article
Selective Bottlenecks Shape Evolutionary Pathways Taken during Mammalian Adaptation of a 1918-like Avian Influenza Virus
Moncla, Louise H., Zhong, Gongxun, Nelson, Chase W., Dinis, Jorge M., Mutschler, James, Hughes, Austin L., Watanabe, Tokiko, Kawaoka, Yoshihiro, Friedrich, Thomas C.
Published in Cell host & microbe (10.02.2016)
Published in Cell host & microbe (10.02.2016)
Get full text
Journal Article
Plant ecological genomics at the limits of life in the Atacama Desert
Eshel, Gil, Araus, Viviana, Undurraga, Soledad, Soto, Daniela C., Moraga, Carol, Montecinos, Alejandro, Moyano, Tomás, Maldonado, Jonathan, Díaz, Francisca P., Varala, Kranthi, Nelson, Chase W., Contreras-López, Orlando, Pal-Gabor, Henrietta, Kraiser, Tatiana, Carrasco-Puga, Gabriela, Nilo-Poyanco, Ricardo, Zegar, Charles M., Orellana, Ariel, Montecino, Martín, Maass, Alejandro, Allende, Miguel L., DeSalle, Robert, Stevenson, Dennis W., González, Mauricio, Latorre, Claudio, Coruzzi, Gloria M., Gutiérrez, Rodrigo A.
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2021)
Get full text
Journal Article
Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance
Zhu, Bin, Xiao, Yanzi, Yeager, Meredith, Clifford, Gary, Wentzensen, Nicolas, Cullen, Michael, Boland, Joseph F., Bass, Sara, Steinberg, Mia K., Raine-Bennett, Tina, Lee, DongHyuk, Burk, Robert D., Pinheiro, Maisa, Song, Lei, Dean, Michael, Nelson, Chase W., Burdett, Laurie, Yu, Kai, Roberson, David, Lorey, Thomas, Franceschi, Silvia, Castle, Philip E., Walker, Joan, Zuna, Rosemary, Schiffman, Mark, Mirabello, Lisa
Published in Nature communications (14.02.2020)
Published in Nature communications (14.02.2020)
Get full text
Journal Article
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome
Hücker, Sarah M, Ardern, Zachary, Goldberg, Tatyana, Schafferhans, Andrea, Bernhofer, Michael, Vestergaard, Gisle, Nelson, Chase W, Schloter, Michael, Rost, Burkhard, Scherer, Siegfried, Neuhaus, Klaus
Published in PloS one (13.09.2017)
Published in PloS one (13.09.2017)
Get full text
Journal Article
The Role of Cryotherapy After Total Knee Arthroplasty: A Systematic Review
Wyatt, Phillip B., Nelson, Chase T., Cyrus, John W., Goldman, Ashton H., Patel, Nirav K.
Published in The Journal of arthroplasty (01.05.2023)
Published in The Journal of arthroplasty (01.05.2023)
Get full text
Journal Article
High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population
Bailey, Adam L, Lauck, Michael, Weiler, Andrea, Sibley, Samuel D, Dinis, Jorge M, Bergman, Zachary, Nelson, Chase W, Correll, Michael, Gleicher, Michael, Hyeroba, David, Tumukunde, Alex, Weny, Geoffrey, Chapman, Colin, Kuhn, Jens H, Hughes, Austin L, Friedrich, Thomas C, Goldberg, Tony L, O'Connor, David H
Published in PloS one (20.03.2014)
Published in PloS one (20.03.2014)
Get full text
Journal Article
Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses
Wilker, Peter R., Dinis, Jorge M., Starrett, Gabriel, Imai, Masaki, Hatta, Masato, Nelson, Chase W., O’Connor, David H., Hughes, Austin L., Neumann, Gabriele, Kawaoka, Yoshihiro, Friedrich, Thomas C.
Published in Nature communications (23.10.2013)
Published in Nature communications (23.10.2013)
Get full text
Journal Article
Discovering unknown human and mouse transcription factor binding sites and their characteristics from ChIP-seq data
Yu, Chun-Ping, Kuo, Chen-Hao, Nelson, Chase W., Chen, Chi-An, Soh, Zhi Thong, Lin, Jinn-Jy, Hsiao, Ru-Xiu, Chang, Chih-Yao, Li, Wen-Hsiung
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2021)
Get full text
Journal Article