'Bingo'-a large language model- and graph neural network-based workflow for the prediction of essential genes from protein data
Ma, Jiani, Song, Jiangning, Young, Neil D, Chang, Bill C H, Korhonen, Pasi K, Campos, Tulio L, Liu, Hui, Gasser, Robin B
Published in Briefings in bioinformatics (22.11.2023)
Published in Briefings in bioinformatics (22.11.2023)
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Journal Article
High-quality reference genome for Clonorchis sinensis
Young, Neil D., Stroehlein, Andreas J., Kinkar, Liina, Wang, Tao, Sohn, Woon-Mok, Chang, Bill C.H., Kaur, Parwinder, Weisz, David, Dudchenko, Olga, Aiden, Erez Lieberman, Korhonen, Pasi K., Gasser, Robin B.
Published in Genomics (San Diego, Calif.) (01.05.2021)
Published in Genomics (San Diego, Calif.) (01.05.2021)
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Journal Article
Chromosome-contiguous genome for the Haecon-5 strain of Haemonchus contortus reveals marked genetic variability and enables the discovery of essential gene candidates
Zheng, Yuanting, Young, Neil D., Campos, Tulio L., Korhonen, Pasi K., Wang, Tao, Sumanam, Sunita B., Taki, Aya C., Byrne, Joseph J., Chang, Bill C.H., Song, Jiangning, Gasser, Robin B.
Published in International journal for parasitology (20.08.2024)
Published in International journal for parasitology (20.08.2024)
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Journal Article
Comparative analysis of amphibian genomes: An emerging resource for basic and applied research
Kosch, Tiffany A, Crawford, Andrew J, Lockridge Mueller, Rachel, Wollenberg Valero, Katharina C, Power, Megan L, Rodríguez, Ariel, O'Connell, Lauren A, Young, Neil D, Skerratt, Lee F
Published in Molecular ecology resources (04.10.2024)
Published in Molecular ecology resources (04.10.2024)
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Journal Article
Characterisation of the tracheal transcriptional response of chickens to chronic infection with Mycoplasma synoviae
Kamathewatta, Kanishka I., Condello, Anna Kanci, Kulappu Arachchige, Sathya N., Young, Neil D., Shil, Pollob K., Noormohammadi, Amir H., Tivendale, Kelly A., Wawegama, Nadeeka K., Browning, Glenn F.
Published in Veterinary microbiology (01.07.2024)
Published in Veterinary microbiology (01.07.2024)
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Journal Article
High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus
Wang, Tao, Ma, Guangxu, Ang, Ching-Seng, Korhonen, Pasi K., Koehler, Anson V., Young, Neil D., Nie, Shuai, Williamson, Nicholas A., Gasser, Robin B.
Published in Journal of proteomics (30.07.2019)
Published in Journal of proteomics (30.07.2019)
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Journal Article
Severely impaired CTL killing is a feature of the neurological disorder Niemann-Pick disease type C1
Castiblanco, Daniela, Rudd-Schmidt, Jesse A., Noori, Tahereh, Sutton, Vivien R., Hung, Ya Hui, Flinsenberg, Thijs W.H., Hodel, Adrian W., Young, Neil D., Smith, Nicholas, Bratkovic, Drago, Peters, Heidi, Walterfang, Mark, Trapani, Joseph A., Brennan, Amelia J., Voskoboinik, Ilia
Published in Blood (24.03.2022)
Published in Blood (24.03.2022)
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Journal Article
Ascaris suum draft genome
Jex, Aaron R., Liu, Shiping, Li, Bo, Young, Neil D., Hall, Ross S., Li, Yingrui, Yang, Linfeng, Zeng, Na, Xu, Xun, Xiong, Zijun, Chen, Fangyuan, Wu, Xuan, Zhang, Guojie, Fang, Xiaodong, Kang, Yi, Anderson, Garry A., Harris, Todd W., Campbell, Bronwyn E., Vlaminck, Johnny, Wang, Tao, Cantacessi, Cinzia, Schwarz, Erich M., Ranganathan, Shoba, Geldhof, Peter, Nejsum, Peter, Sternberg, Paul W., Yang, Huanming, Wang, Jun, Wang, Jian, Gasser, Robin B.
Published in Nature (London) (24.11.2011)
Published in Nature (London) (24.11.2011)
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Journal Article
Differential Response of the Chicken Trachea to Chronic Infection with Virulent Mycoplasma gallisepticum Strain Ap3AS and Vaxsafe MG (Strain ts-304): a Transcriptional Profile
Kulappu Arachchige, Sathya N, Young, Neil D, Shil, Pollob K, Legione, Alistair R, Kanci Condello, Anna, Browning, Glenn F, Wawegama, Nadeeka K
Published in Infection and immunity (20.04.2020)
Published in Infection and immunity (20.04.2020)
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Journal Article
Structure activity relationship and target prediction for ABX464 analogues in Caenorhabditis elegans
Shanley, Harrison T, Taki, Aya C, Nguyen, Nghi, Wang, Tao, Byrne, Joseph J, Ang, Ching-Seng, Leeming, Michael G, Nie, Shuai, Williamson, Nicholas, Zheng, Yuanting, Young, Neil D, Korhonen, Pasi K, Hofmann, Andreas, Wells, Tim N C, Jabbar, Abdul, Sleebs, Brad E, Gasser, Robin B
Published in Bioorganic & medicinal chemistry (15.01.2024)
Published in Bioorganic & medicinal chemistry (15.01.2024)
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Journal Article
The redlegged earth mite draft genome provides new insights into pesticide resistance evolution and demography in its invasive Australian range
Thia, Joshua A., Korhonen, Pasi K., Young, Neil D., Gasser, Robin B., Umina, Paul A., Yang, Qiong, Edwards, Owain, Walsh, Tom, Hoffmann, Ary A.
Published in Journal of evolutionary biology (01.02.2023)
Published in Journal of evolutionary biology (01.02.2023)
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Journal Article
Molecular alterations during larval development of Haemonchus contortus in vitro are under tight post-transcriptional control
Ma, Guangxu, Wang, Tao, Korhonen, Pasi K., Ang, Ching-Seng, Williamson, Nicholas A., Young, Neil D., Stroehlein, Andreas J., Hall, Ross S., Koehler, Anson V., Hofmann, Andreas, Gasser, Robin B.
Published in International journal for parasitology (01.08.2018)
Published in International journal for parasitology (01.08.2018)
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Journal Article
Chromosome‐level genome assembly defines female‐biased genes associated with sex determination and differentiation in the human blood fluke Schistosoma japonicum
Xu, Xindong, Wang, Yifeng, Wang, Changhong, Guo, Gangqiang, Yu, Xinyu, Dai, Yang, Liu, Yaobao, Wei, Guiying, He, Xiaohui, Jin, Ge, Zhang, Ziqiu, Guan, Qingtian, Pain, Arnab, Wang, Shengyue, Zhang, Wenbao, Young, Neil D., Gasser, Robin B., McManus, Donald P., Cao, Jun, Zhou, Qi, Zhang, Qingfeng
Published in Molecular ecology resources (01.01.2023)
Published in Molecular ecology resources (01.01.2023)
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Journal Article
Omega-1 knockdown in Schistosoma mansoni eggs by lentivirus transduction reduces granuloma size in vivo
Hagen, Jana, Young, Neil D., Every, Alison L., Pagel, Charles N., Schnoeller, Corinna, Scheerlinck, Jean-Pierre Y., Gasser, Robin B., Kalinna, Bernd H.
Published in Nature communications (17.11.2014)
Published in Nature communications (17.11.2014)
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Journal Article
Genome‐wide exploration reveals distinctive northern and southern variants of Clonorchis sinensis in the Far East
Kinkar, Liina, Korhonen, Pasi K., Saarma, Urmas, Wang, Tao, Zhu, Xing‐Quan, Harliwong, Ivon, Yang, Bicheng, Fink, J. Lynn, Wang, Daxi, Chang, Bill C. H., Chelomina, Galina N., Koehler, Anson V., Young, Neil D., Gasser, Robin B.
Published in Molecular ecology resources (01.05.2023)
Published in Molecular ecology resources (01.05.2023)
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Journal Article
“Escalibur”—A practical pipeline for the de novo analysis of nucleotide variation in nonmodel eukaryotes
Korhonen, Pasi K., Shaban, Babak, Faux, Noel G., Kinkar, Liina, Chang, Bill C. H., Wang, Daxi, Yang, Bicheng, Young, Neil D., Gasser, Robin B.
Published in Molecular ecology resources (01.07.2022)
Published in Molecular ecology resources (01.07.2022)
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Journal Article
Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets
Stroehlein, Andreas J., Young, Neil D., Jex, Aaron R., Sternberg, Paul W., Tan, Patrick, Boag, Peter R., Hofmann, Andreas, Gasser, Robin B.
Published in Scientific reports (04.12.2015)
Published in Scientific reports (04.12.2015)
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