DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development
Kraiczy, Judith, Nayak, Komal M, Howell, Kate J, Ross, Alexander, Forbester, Jessica, Salvestrini, Camilla, Mustata, Roxana, Perkins, Sally, Andersson-Rolf, Amanda, Leenen, Esther, Liebert, Anke, Vallier, Ludovic, Rosenstiel, Philip C, Stegle, Oliver, Dougan, Gordon, Heuschkel, Robert, Koo, Bon-Kyoung, Zilbauer, Matthias
Published in Gut (01.01.2019)
Published in Gut (01.01.2019)
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Journal Article
DNA methylation analysis in the intestinal epithelium-effect of cell separation on gene expression and methylation profile
Jenke, Andreas C, Postberg, Jan, Raine, Timothy, Nayak, Komal M, Molitor, Malte, Wirth, Stefan, Kaser, Arthur, Parkes, Miles, Heuschkel, Robert B, Orth, Valerie, Zilbauer, Matthias
Published in PloS one (08.02.2013)
Published in PloS one (08.02.2013)
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Journal Article
An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells
Lulla, Valeria, Dinan, Adam M., Hosmillo, Myra, Chaudhry, Yasmin, Sherry, Lee, Irigoyen, Nerea, Nayak, Komal M., Stonehouse, Nicola J., Zilbauer, Matthias, Goodfellow, Ian, Firth, Andrew E.
Published in Nature microbiology (01.02.2019)
Published in Nature microbiology (01.02.2019)
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Journal Article
DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome
Howell, Kate Joanne, Kraiczy, Judith, Nayak, Komal M., Gasparetto, Marco, Ross, Alexander, Lee, Claire, Mak, Tim N., Koo, Bon-Kyoung, Kumar, Nitin, Lawley, Trevor, Sinha, Anupam, Rosenstiel, Philip, Heuschkel, Robert, Stegle, Oliver, Zilbauer, Matthias
Published in Gastroenterology (New York, N.Y. 1943) (01.02.2018)
Published in Gastroenterology (New York, N.Y. 1943) (01.02.2018)
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Journal Article
An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells
Lulla, Valeria, Dinan, Adam M., Hosmillo, Myra, Chaudhry, Yasmin, Sherry, Lee, Irigoyen, Nerea, Nayak, Komal M., Stonehouse, Nicola J., Zilbauer, Matthias, Goodfellow, Ian, Firth, Andrew E.
Published in Nature microbiology (01.02.2019)
Published in Nature microbiology (01.02.2019)
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Journal Article
Patient-derived organoid biobank identifies epigenetic dysregulation of intestinal epithelial MHC-I as a novel mechanism in severe Crohn’s Disease
Dennison, Thomas W, Edgar, Rachel D, Payne, Felicity, Nayak, Komal M, Ross, Alexander D. B., Cenier, Aurelie, Glemas, Claire, Giachero, Federica, Foster, April R, Harris, Rebecca, Kraiczy, Judith, Salvestrini, Camilla, Stavrou, Georgia, Torrente, Franco, Brook, Kimberley, Trayers, Claire, Elmentaite, Rasa, Youssef, Gehad, Tél, Bálint, Winton, Douglas James, Skoufou-Papoutsaki, Nefeli, Adler, Sam, Bufler, Philip, Azabdaftari, Aline, Jenke, Andreas, G, Natasha, Thomas, Natasha, Miele, Erasmo, Al-Mohammad, Abdulrahman, Guarda, Greta, Kugathasan, Subra, Venkateswaran, Suresh, Clatworthy, Menna R, Castro-Dopico, Tomas, Suchanek, Ondrej, Strisciuglio, Caterina, Gasparetto, Marco, Lee, Seokjun, Xu, Xingze, Bello, Erica, Han, Namshik, Zerbino, Daniel R., Teichmann, Sarah A, Nys, Josquin, Heuschkel, Robert, Perrone, Francesca, Zilbauer, Matthias
Published in Gut (01.09.2024)
Published in Gut (01.09.2024)
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Culture-Associated DNA Methylation Changes Impact on Cellular Function of Human Intestinal Organoids
Edgar, Rachel D., Perrone, Francesca, Foster, April R., Payne, Felicity, Lewis, Sophia, Nayak, Komal M., Kraiczy, Judith, Cenier, Aurélie, Torrente, Franco, Salvestrini, Camilla, Heuschkel, Robert, Hensel, Kai O., Harris, Rebecca, Jones, D. Leanne, Zerbino, Daniel R., Zilbauer, Matthias
Published in Cellular and molecular gastroenterology and hepatology (01.01.2022)
Published in Cellular and molecular gastroenterology and hepatology (01.01.2022)
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Journal Article
Culture Associated DNA Methylation Changes Impact on Cellular Function of Human Intestinal Organoids
Edgar, Rachel D, Perrone, Francesca, Foster, April R, Payne, Felicity, Lewis, Sophia, Nayak, Komal M, Kraiczy, Judith, Cenier, Aurélie, Torrente, Franco, Salvestrini, Camilla, Heuschkel, Robert, Hensel, Kai O, Harris, Rebecca, Jones, D Leanne, Zerbino, Daniel R, Zilbauer, Matthias
Published in bioRxiv (25.04.2022)
Published in bioRxiv (25.04.2022)
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