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A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Published in Nature microbiology (01.11.2020)
Published in Nature microbiology (01.11.2020)
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SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway
Willett, Brian J., Grove, Joe, MacLean, Oscar A., Wilkie, Craig, De Lorenzo, Giuditta, Furnon, Wilhelm, Cantoni, Diego, Scott, Sam, Logan, Nicola, Ashraf, Shirin, Manali, Maria, Szemiel, Agnieszka, Cowton, Vanessa, Vink, Elen, Harvey, William T., Davis, Chris, Asamaphan, Patawee, Smollett, Katherine, Tong, Lily, Orton, Richard, Hughes, Joseph, Holland, Poppy, Silva, Vanessa, Pascall, David J., Puxty, Kathryn, da Silva Filipe, Ana, Yebra, Gonzalo, Shaaban, Sharif, Holden, Matthew T. G., Pinto, Rute Maria, Gunson, Rory, Templeton, Kate, Murcia, Pablo R., Patel, Arvind H., Klenerman, Paul, Dunachie, Susanna, Haughney, John, Robertson, David L., Palmarini, Massimo, Ray, Surajit, Thomson, Emma C.
Published in Nature microbiology (01.08.2022)
Published in Nature microbiology (01.08.2022)
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Longitudinal observation and decline of neutralizing antibody responses in the three months following SARS-CoV-2 infection in humans
Seow, Jeffrey, Graham, Carl, Merrick, Blair, Acors, Sam, Pickering, Suzanne, Steel, Kathryn J. A., Hemmings, Oliver, O’Byrne, Aoife, Kouphou, Neophytos, Galao, Rui Pedro, Betancor, Gilberto, Wilson, Harry D., Signell, Adrian W., Winstone, Helena, Kerridge, Claire, Huettner, Isabella, Jimenez-Guardeño, Jose M., Lista, Maria Jose, Temperton, Nigel, Snell, Luke B., Bisnauthsing, Karen, Moore, Amelia, Green, Adrian, Martinez, Lauren, Stokes, Brielle, Honey, Johanna, Izquierdo-Barras, Alba, Arbane, Gill, Patel, Amita, Tan, Mark Kia Ik, O’Connell, Lorcan, O’Hara, Geraldine, MacMahon, Eithne, Douthwaite, Sam, Nebbia, Gaia, Batra, Rahul, Martinez-Nunez, Rocio, Shankar-Hari, Manu, Edgeworth, Jonathan D., Neil, Stuart J. D., Malim, Michael H., Doores, Katie J.
Published in Nature microbiology (01.12.2020)
Published in Nature microbiology (01.12.2020)
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Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
Boni, Maciej F., Lemey, Philippe, Jiang, Xiaowei, Lam, Tommy Tsan-Yuk, Perry, Blair W., Castoe, Todd A., Rambaut, Andrew, Robertson, David L.
Published in Nature microbiology (01.11.2020)
Published in Nature microbiology (01.11.2020)
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The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets
Peacock, Thomas P., Goldhill, Daniel H., Zhou, Jie, Baillon, Laury, Frise, Rebecca, Swann, Olivia C., Kugathasan, Ruthiran, Penn, Rebecca, Brown, Jonathan C., Sanchez-David, Raul Y., Braga, Luca, Williamson, Maia Kavanagh, Hassard, Jack A., Staller, Ecco, Hanley, Brian, Osborn, Michael, Giacca, Mauro, Davidson, Andrew D., Matthews, David A., Barclay, Wendy S.
Published in Nature microbiology (01.07.2021)
Published in Nature microbiology (01.07.2021)
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COVID-19-associated fungal infections
Hoenigl, Martin, Seidel, Danila, Sprute, Rosanne, Cunha, Cristina, Oliverio, Matteo, Goldman, Gustavo H., Ibrahim, Ashraf S., Carvalho, Agostinho
Published in Nature microbiology (01.08.2022)
Published in Nature microbiology (01.08.2022)
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The neuroactive potential of the human gut microbiota in quality of life and depression
Valles-Colomer, Mireia, Falony, Gwen, Darzi, Youssef, Tigchelaar, Ettje F., Wang, Jun, Tito, Raul Y., Schiweck, Carmen, Kurilshikov, Alexander, Joossens, Marie, Wijmenga, Cisca, Claes, Stephan, Van Oudenhove, Lukas, Zhernakova, Alexandra, Vieira-Silva, Sara, Raes, Jeroen
Published in Nature microbiology (01.04.2019)
Published in Nature microbiology (01.04.2019)
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Community-led, integrated, reproducible multi-omics with anvi’o
Eren, A. Murat, Kiefl, Evan, Shaiber, Alon, Veseli, Iva, Miller, Samuel E., Schechter, Matthew S., Fink, Isaac, Pan, Jessica N., Yousef, Mahmoud, Fogarty, Emily C., Trigodet, Florian, Watson, Andrea R., Esen, Özcan C., Moore, Ryan M., Clayssen, Quentin, Lee, Michael D., Kivenson, Veronika, Graham, Elaina D., Merrill, Bryan D., Karkman, Antti, Blankenberg, Daniel, Eppley, John M., Sjödin, Andreas, Scott, Jarrod J., Vázquez-Campos, Xabier, McKay, Luke J., McDaniel, Elizabeth A., Stevens, Sarah L. R., Anderson, Rika E., Fuessel, Jessika, Fernandez-Guerra, Antonio, Maignien, Lois, Delmont, Tom O., Willis, Amy D.
Published in Nature microbiology (01.01.2021)
Published in Nature microbiology (01.01.2021)
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Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets
Vogels, Chantal B. F., Brito, Anderson F., Wyllie, Anne L., Fauver, Joseph R., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Casanovas-Massana, Arnau, Catherine Muenker, M., Moore, Adam J., Klein, Jonathan, Lu, Peiwen, Lu-Culligan, Alice, Jiang, Xiaodong, Kim, Daniel J., Kudo, Eriko, Mao, Tianyang, Moriyama, Miyu, Oh, Ji Eun, Park, Annsea, Silva, Julio, Song, Eric, Takahashi, Takehiro, Taura, Manabu, Tokuyama, Maria, Venkataraman, Arvind, Weizman, Orr-El, Wong, Patrick, Yang, Yexin, Cheemarla, Nagarjuna R., White, Elizabeth B., Lapidus, Sarah, Earnest, Rebecca, Geng, Bertie, Vijayakumar, Pavithra, Odio, Camila, Fournier, John, Bermejo, Santos, Farhadian, Shelli, Dela Cruz, Charles S., Iwasaki, Akiko, Ko, Albert I., Landry, Marie L., Foxman, Ellen F., Grubaugh, Nathan D.
Published in Nature microbiology (01.10.2020)
Published in Nature microbiology (01.10.2020)
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Gut microbiome structure and metabolic activity in inflammatory bowel disease
Franzosa, Eric A., Sirota-Madi, Alexandra, Avila-Pacheco, Julian, Fornelos, Nadine, Haiser, Henry J., Reinker, Stefan, Vatanen, Tommi, Hall, A. Brantley, Mallick, Himel, McIver, Lauren J., Sauk, Jenny S., Wilson, Robin G., Stevens, Betsy W., Scott, Justin M., Pierce, Kerry, Deik, Amy A., Bullock, Kevin, Imhann, Floris, Porter, Jeffrey A., Zhernakova, Alexandra, Fu, Jingyuan, Weersma, Rinse K., Wijmenga, Cisca, Clish, Clary B., Vlamakis, Hera, Huttenhower, Curtis, Xavier, Ramnik J.
Published in Nature microbiology (01.02.2019)
Published in Nature microbiology (01.02.2019)
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Bifidobacterium species associated with breastfeeding produce aromatic lactic acids in the infant gut
Laursen, Martin F., Sakanaka, Mikiyasu, von Burg, Nicole, Mörbe, Urs, Andersen, Daniel, Moll, Janne Marie, Pekmez, Ceyda T., Rivollier, Aymeric, Michaelsen, Kim F., Mølgaard, Christian, Lind, Mads Vendelbo, Dragsted, Lars O., Katayama, Takane, Frandsen, Henrik L., Vinggaard, Anne Marie, Bahl, Martin I., Brix, Susanne, Agace, William, Licht, Tine R., Roager, Henrik M.
Published in Nature microbiology (01.11.2021)
Published in Nature microbiology (01.11.2021)
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Antibody-dependent enhancement and SARS-CoV-2 vaccines and therapies
Lee, Wen Shi, Wheatley, Adam K., Kent, Stephen J., DeKosky, Brandon J.
Published in Nature microbiology (01.10.2020)
Published in Nature microbiology (01.10.2020)
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Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus
Kraemer, Moritz U. G., Reiner, Robert C., Brady, Oliver J., Messina, Jane P., Gilbert, Marius, Pigott, David M., Yi, Dingdong, Johnson, Kimberly, Earl, Lucas, Marczak, Laurie B., Shirude, Shreya, Davis Weaver, Nicole, Bisanzio, Donal, Perkins, T. Alex, Lai, Shengjie, Lu, Xin, Jones, Peter, Coelho, Giovanini E., Carvalho, Roberta G., Van Bortel, Wim, Marsboom, Cedric, Hendrickx, Guy, Schaffner, Francis, Moore, Chester G., Nax, Heinrich H., Bengtsson, Linus, Wetter, Erik, Tatem, Andrew J., Brownstein, John S., Smith, David L., Lambrechts, Louis, Cauchemez, Simon, Linard, Catherine, Faria, Nuno R., Pybus, Oliver G., Scott, Thomas W., Liu, Qiyong, Yu, Hongjie, Wint, G. R. William, Hay, Simon I., Golding, Nick
Published in Nature microbiology (01.05.2019)
Published in Nature microbiology (01.05.2019)
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Defining and combating antibiotic resistance from One Health and Global Health perspectives
Hernando-Amado, Sara, Coque, Teresa M., Baquero, Fernando, Martínez, José L.
Published in Nature microbiology (01.09.2019)
Published in Nature microbiology (01.09.2019)
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The current and future global distribution and population at risk of dengue
Messina, Jane P., Brady, Oliver J., Golding, Nick, Kraemer, Moritz U. G., Wint, G. R. William, Ray, Sarah E., Pigott, David M., Shearer, Freya M., Johnson, Kimberly, Earl, Lucas, Marczak, Laurie B., Shirude, Shreya, Davis Weaver, Nicole, Gilbert, Marius, Velayudhan, Raman, Jones, Peter, Jaenisch, Thomas, Scott, Thomas W., Reiner, Robert C., Hay, Simon I.
Published in Nature microbiology (01.09.2019)
Published in Nature microbiology (01.09.2019)
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Reduction of microbial diversity in grassland soil is driven by long-term climate warming
Wu, Linwei, Zhang, Ya, Guo, Xue, Ning, Daliang, Zhou, Xishu, Feng, Jiajie, Yuan, Mengting Maggie, Liu, Suo, Guo, Jiajing, Gao, Zhipeng, Ma, Jie, Kuang, Jialiang, Jian, Siyang, Han, Shun, Yang, Zhifeng, Ouyang, Yang, Fu, Ying, Xiao, Naijia, Liu, Xueduan, Wu, Liyou, Zhou, Aifen, Yang, Yunfeng, Tiedje, James M., Zhou, Jizhong
Published in Nature microbiology (01.07.2022)
Published in Nature microbiology (01.07.2022)
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Akkermansia muciniphila secretes a glucagon-like peptide-1-inducing protein that improves glucose homeostasis and ameliorates metabolic disease in mice
Yoon, Hyo Shin, Cho, Chung Hwan, Yun, Myeong Sik, Jang, Sung Jae, You, Hyun Ju, Kim, Jun-hyeong, Han, Dohyun, Cha, Kwang Hyun, Moon, Sung Hyun, Lee, Kiuk, Kim, Yeon-Ji, Lee, Sung-Joon, Nam, Tae-Wook, Ko, GwangPyo
Published in Nature microbiology (01.05.2021)
Published in Nature microbiology (01.05.2021)
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
Zhalnina, Kateryna, Louie, Katherine B., Hao, Zhao, Mansoori, Nasim, da Rocha, Ulisses Nunes, Shi, Shengjing, Cho, Heejung, Karaoz, Ulas, Loqué, Dominique, Bowen, Benjamin P., Firestone, Mary K., Northen, Trent R., Brodie, Eoin L.
Published in Nature microbiology (01.04.2018)
Published in Nature microbiology (01.04.2018)
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