A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins
Letelier, Joaquín, de la Calle-Mustienes, Elisa, Pieretti, Joyce, Naranjo, Silvia, Maeso, Ignacio, Nakamura, Tetsuya, Pascual-Anaya, Juan, Shubin, Neil H., Schneider, Igor, Martinez-Morales, Juan Ramón, Gómez-Skarmeta, José Luis
Published in Nature genetics (01.04.2018)
Published in Nature genetics (01.04.2018)
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Gómez-Marín, Carlos, Tena, Juan J, Acemel, Rafael D, López-Mayorga, Macarena, Naranjo, Silvia, de la Calle-Mustienes, Elisa, Maeso, Ignacio, Beccari, Leonardo, Aneas, Ivy, Vielmas, Erika, Bovolenta, Paola, Nobrega, Marcelo A, Carvajal, Jaime, Gómez-Skarmeta, José Luis
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
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An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
Grau-Bové, Xavier, Subirana, Lucie, Meister, Lydvina, Soubigou, Anaël, Neto, Ana, Elek, Anamaria, Naranjo, Silvia, Fornas, Oscar, Gomez-Skarmeta, Jose Luis, Tena, Juan J., Irimia, Manuel, Bertrand, Stéphanie, Sebé-Pedrós, Arnau, Escriva, Hector
Published in Nature communications (29.05.2024)
Published in Nature communications (29.05.2024)
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The little skate genome and the evolutionary emergence of wing-like fins
Marlétaz, Ferdinand, de la Calle-Mustienes, Elisa, Acemel, Rafael D., Paliou, Christina, Naranjo, Silvia, Martínez-García, Pedro Manuel, Cases, Ildefonso, Sleight, Victoria A., Hirschberger, Christine, Marcet-Houben, Marina, Navon, Dina, Andrescavage, Ali, Skvortsova, Ksenia, Duckett, Paul Edward, González-Rajal, Álvaro, Bogdanovic, Ozren, Gibcus, Johan H., Yang, Liyan, Gallardo-Fuentes, Lourdes, Sospedra, Ismael, Lopez-Rios, Javier, Darbellay, Fabrice, Visel, Axel, Dekker, Job, Shubin, Neil, Gabaldón, Toni, Nakamura, Tetsuya, Tena, Juan J., Lupiáñez, Darío G., Rokhsar, Daniel S., Gómez-Skarmeta, José Luis
Published in Nature (London) (20.04.2023)
Published in Nature (London) (20.04.2023)
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Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease loci
D'haene, Eva, López-Soriano, Víctor, Martínez-García, Pedro Manuel, Kalayanamontri, Soraya, Rey, Alfredo Dueñas, Sousa-Ortega, Ana, Naranjo, Silvia, Van de Sompele, Stijn, Vantomme, Lies, Mahieu, Quinten, Vergult, Sarah, Neto, Ana, Gómez-Skarmeta, José Luis, Martínez-Morales, Juan Ramón, Bauwens, Miriam, Tena, Juan Jesús, De Baere, Elfride
Published in Genome Biology (17.05.2024)
Published in Genome Biology (17.05.2024)
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Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish
Buono, Lorena, Corbacho, Jorge, Naranjo, Silvia, Almuedo-Castillo, María, Moreno-Marmol, Tania, de la Cerda, Berta, Sanabria-Reinoso, Estefanía, Polvillo, Rocío, Díaz-Corrales, Francisco-Javier, Bogdanovic, Ozren, Bovolenta, Paola, Martínez-Morales, Juan-Ramón
Published in Nature communications (23.06.2021)
Published in Nature communications (23.06.2021)
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Author Correction: Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish
Buono, Lorena, Corbacho, Jorge, Naranjo, Silvia, Almuedo-Castillo, María, Moreno-Marmol, Tania, de la Cerda, Berta, Sanabria-Reinoso, Estefanía, Polvillo, Rocío, Díaz-Corrales, Francisco-Javier, Bogdanovic, Ozren, Bovolenta, Paola, Martínez-Morales, Juan-Ramón
Published in Nature communications (27.07.2021)
Published in Nature communications (27.07.2021)
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Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
Vicente-García, Cristina, Villarejo-Balcells, Barbara, Irastorza-Azcárate, Ibai, Naranjo, Silvia, Acemel, Rafael D, Tena, Juan J, Rigby, Peter W J, Devos, Damien P, Gómez-Skarmeta, Jose L, Carvajal, Jaime J
Published in Genome Biology (14.06.2017)
Published in Genome Biology (14.06.2017)
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Genome-wide chromatin accessibility and gene expression profiling during flatfish metamorphosis
Guerrero-Peña, Laura, Suarez-Bregua, Paula, Gil-Gálvez, Alejandro, Naranjo, Silvia, Méndez-Martínez, Luis, Tur, Ricardo, García-Fernández, Pablo, Tena, Juan J, Rotllant, Josep
Published in Scientific data (08.04.2023)
Published in Scientific data (08.04.2023)
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Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis‐regulatory regions in zebrafish
Bessa, José, Tena, Juan J., de la Calle‐Mustienes, Elisa, Fernández‐Miñán, Ana, Naranjo, Silvia, Fernández, Almudena, Montoliu, Lluis, Akalin, Altuna, Lenhard, Boris, Casares, Fernando, Gómez‐Skarmeta, José Luis
Published in Developmental dynamics (01.09.2009)
Published in Developmental dynamics (01.09.2009)
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The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression
Pittman, Alan M, Naranjo, Silvia, Webb, Emily, Broderick, Peter, Lips, Esther H, van Wezel, Tom, Morreau, Hans, Sullivan, Kate, Fielding, Sarah, Twiss, Philip, Vijayakrishnan, Jayaram, Casares, Fernando, Qureshi, Mobshra, Gómez-Skarmeta, José Luis, Houlston, Richard S
Published in Genome Research (01.06.2009)
Published in Genome Research (01.06.2009)
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Allelic variation at the 8q23.3 colorectal cancer risk locus functions as a cis-acting regulator of EIF3H
Pittman, Alan M, Naranjo, Silvia, Jalava, Sanni E, Twiss, Philip, Ma, Yussanne, Olver, Bianca, Lloyd, Amy, Vijayakrishnan, Jayaram, Qureshi, Mobshra, Broderick, Peter, van Wezel, Tom, Morreau, Hans, Tuupanen, Sari, Aaltonen, Lauri A, Alonso, M Eva, Manzanares, Miguel, Gavilán, Angela, Visakorpi, Tapio, Gómez-Skarmeta, José Luis, Houlston, Richard S
Published in PLoS genetics (01.09.2010)
Published in PLoS genetics (01.09.2010)
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A mobile insulator system to detect and disrupt cis-regulatory landscapes in vertebrates
Bessa, José, Luengo, Mario, Rivero-Gil, Solangel, Ariza-Cosano, Ana, Maia, António H F, Ruiz-Ruano, Francisco J, Caballero, Pablo, Naranjo, Silvia, Carvajal, Jaime J, Gómez-Skarmeta, José Luis
Published in Genome research (01.03.2014)
Published in Genome research (01.03.2014)
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Comportamiento de los estudios globales sobre migración en América Latina: Un tratamiento cienciométrico mediante Scopus
Haro Sarango, Alexander Fernando, Carranza Guerrero, Mirian Noemí, Naranjo Lozada, Silvia, López Solís, Oscar Patricio
Published in Bitácora urbano-territorial (01.01.2024)
Published in Bitácora urbano-territorial (01.01.2024)
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Characterization of new otic enhancers of the pou3f4 gene reveal distinct signaling pathway regulation and spatio-temporal patterns
Robert-Moreno, Àlex, Naranjo, Silvia, de la Calle-Mustienes, Elisa, Gómez-Skarmeta, José Luis, Alsina, Berta
Published in PloS one (31.12.2010)
Published in PloS one (31.12.2010)
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Obesity-associated variants within FTO form long-range functional connections with IRX3
Smemo, Scott, Tena, Juan J., Kim, Kyoung-Han, Gamazon, Eric R., Sakabe, Noboru J., Gómez-Marín, Carlos, Aneas, Ivy, Credidio, Flavia L., Sobreira, Débora R., Wasserman, Nora F., Lee, Ju Hee, Puviindran, Vijitha, Tam, Davis, Shen, Michael, Son, Joe Eun, Vakili, Niki Alizadeh, Sung, Hoon-Ki, Naranjo, Silvia, Acemel, Rafael D., Manzanares, Miguel, Nagy, Andras, Cox, Nancy J., Hui, Chi-Chung, Gomez-Skarmeta, Jose Luis, Nóbrega, Marcelo A.
Published in Nature (London) (20.03.2014)
Published in Nature (London) (20.03.2014)
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The Shh/Gli3 gene regulatory network precedes the origin of paired fins and reveals the deep homology between distal fins and digits
Letelier, Joaquín, Naranjo, Silvia, Sospedra-Arrufat, Ismael, Martinez-Morales, Juan Ramón, Lopez-Rios, Javier, Shubin, Neil, Gómez-Skarmeta, José Luis
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2021)
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