The Exoribonuclease Nibbler Controls 3′ End Processing of MicroRNAs in Drosophila
Liu, Nan, Abe, Masashi, Sabin, Leah R., Hendriks, Gert-Jan, Naqvi, Ammar S., Yu, Zhenming, Cherry, Sara, Bonini, Nancy M.
Published in Current biology (22.11.2011)
Published in Current biology (22.11.2011)
Get full text
Journal Article
Aberrant splicing in B-cell acute lymphoblastic leukemia
Black, Kathryn L, Naqvi, Ammar S, Asnani, Mukta, Hayer, Katharina E, Yang, Scarlett Y, Gillespie, Elisabeth, Bagashev, Asen, Pillai, Vinodh, Tasian, Sarah K, Gazzara, Matthew R, Carroll, Martin, Taylor, Deanne, Lynch, Kristen W, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Published in Nucleic acids research (30.11.2018)
Published in Nucleic acids research (30.11.2018)
Get full text
Journal Article
The Msi Family of RNA-Binding Proteins Function Redundantly as Intestinal Oncoproteins
Li, Ning, Yousefi, Maryam, Nakauka-Ddamba, Angela, Li, Fan, Vandivier, Lee, Parada, Kimberly, Woo, Dong-Hun, Wang, Shan, Naqvi, Ammar S., Rao, Shilpa, Tobias, John, Cedeno, Ryan J., Minuesa, Gerard, Y, Katz, Barlowe, Trevor S., Valvezan, Alexander, Shankar, Sheila, Deering, Raquel P., Klein, Peter S., Jensen, Shane T., Kharas, Michael G., Gregory, Brian D., Yu, Zhengquan, Lengner, Christopher J.
Published in Cell reports (Cambridge) (22.12.2015)
Published in Cell reports (Cambridge) (22.12.2015)
Get full text
Journal Article
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
Gaonkar, Krutika S, Marini, Federico, Rathi, Komal S, Jain, Payal, Zhu, Yuankun, Chimicles, Nicholas A, Brown, Miguel A, Naqvi, Ammar S, Zhang, Bo, Storm, Phillip B, Maris, John M, Raman, Pichai, Resnick, Adam C, Strauch, Konstantin, Taroni, Jaclyn N, Rokita, Jo Lynne
Published in BMC bioinformatics (14.12.2020)
Published in BMC bioinformatics (14.12.2020)
Get full text
Journal Article
A transcriptome-based classifier to determine molecular subtypes in medulloblastoma
Rathi, Komal S, Arif, Sherjeel, Koptyra, Mateusz, Naqvi, Ammar S, Taylor, Deanne M, Storm, Phillip B, Resnick, Adam C, Rokita, Jo Lynne, Raman, Pichai
Published in PLoS computational biology (29.10.2020)
Published in PLoS computational biology (29.10.2020)
Get full text
Journal Article
Aberrant splicing in B-cell acute lymphoblastic leukemia
Black, Kathryn L, Naqvi, Ammar S, Asnani, Mukta, Hayer, Katharina E, Yang, Scarlett Y, Gillespie, Elisabeth, Bagashev, Asen, Pillai, Vinodh, Tasian, Sarah K, Gazzara, Matthew R, Carroll, Martin, Taylor, Deanne, Lynch, Kristen W, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Published in Nucleic acids research (25.01.2019)
Published in Nucleic acids research (25.01.2019)
Get full text
Journal Article
Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies
Zheng, Sisi, Gillespie, Elisabeth, Naqvi, Ammar S, Hayer, Katharina E, Ang, Zhiwei, Torres-Diz, Manuel, Quesnel-Vallières, Mathieu, Hottman, David A, Bagashev, Asen, Chukinas, John, Schmidt, Carolin, Asnani, Mukta, Shraim, Rawan, Taylor, Deanne M, Rheingold, Susan R, O'Brien, Maureen M, Singh, Nathan, Lynch, Kristen W, Ruella, Marco, Barash, Yoseph, Tasian, Sarah K, Thomas-Tikhonenko, Andrei
Published in Blood cancer discovery (01.03.2022)
Published in Blood cancer discovery (01.03.2022)
Get full text
Journal Article
Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets
Karaiskos, Spyros, Naqvi, Ammar S, Swanson, Karl E, Grigoriev, Andrey
Published in Biology direct (16.09.2015)
Published in Biology direct (16.09.2015)
Get full text
Journal Article
Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19
Asnani, Mukta, Hayer, Katharina E, Naqvi, Ammar S, Zheng, Sisi, Yang, Scarlett Y, Oldridge, Derek, Ibrahim, Fadia, Maragkakis, Manolis, Gazzara, Matthew R, Black, Kathryn L, Bagashev, Asen, Taylor, Deanne, Mourelatos, Zissimos, Grupp, Stephan A, Barrett, David, Maris, John M, Sotillo, Elena, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Published in Leukemia (01.04.2020)
Published in Leukemia (01.04.2020)
Get full text
Journal Article
Heterogeneity of surface CD19 and CD22 expression in B lymphoblastic leukemia
Rosenthal, Jaclyn, Naqvi, Ammar S., Luo, Minjie, Wertheim, Gerald, Paessler, Michele, Thomas‐Tikhonenko, Andrei, Rheingold, Susan R., Pillai, Vinodh
Published in American journal of hematology (01.11.2018)
Published in American journal of hematology (01.11.2018)
Get full text
Journal Article
AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification
Kim, Jung, Naqvi, Ammar S, Corbett, Ryan J, Kaufman, Rebecca S, Vaksman, Zalman, Brown, Miguel A, Miller, Daniel P, Phul, Saksham, Geng, Zhuangzhuang, Storm, Phillip B, Resnick, Adam C, Stewart, Douglas R, Rokita, Jo Lynne, Diskin, Sharon J
Published in Bioinformatics (Oxford, England) (04.03.2024)
Published in Bioinformatics (Oxford, England) (04.03.2024)
Get full text
Journal Article
Targeting CD123 in blastic plasmacytoid dendritic cell neoplasm using allogeneic anti-CD123 CAR T cells
Cai, Tianyu, Gouble, Agnès, Black, Kathryn L, Skwarska, Anna, Naqvi, Ammar S, Taylor, Deanne, Zhao, Ming, Yuan, Qi, Sugita, Mayumi, Zhang, Qi, Galetto, Roman, Filipe, Stéphanie, Cavazos, Antonio, Han, Lina, Kuruvilla, Vinitha, Ma, Helen, Weng, Connie, Liu, Chang-Gong, Liu, Xiuping, Konoplev, Sergej, Gu, Jun, Tang, Guilin, Su, Xiaoping, Al-Atrash, Gheath, Ciurea, Stefan, Neelapu, Sattva S, Lane, Andrew A, Kantarjian, Hagop, Guzman, Monica L, Pemmaraju, Naveen, Smith, Julianne, Thomas-Tikhonenko, Andrei, Konopleva, Marina
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
Get full text
Journal Article
FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells
Yang, Scarlett Y., Hayer, Katharina E., Fazelinia, Hossein, Spruce, Lynn A., Asnani, Mukta, Black, Kathryn L., Naqvi, Ammar S., Pillai, Vinodh, Barash, Yoseph, Elenitoba-Johnson, Kojo S. J., Thomas-Tikhonenko, Andrei
Published in Blood advances (11.04.2023)
Published in Blood advances (11.04.2023)
Get full text
Journal Article
The Open Pediatric Cancer Project
Geng, Zhuangzhuang, Wafula, Eric, Corbett, Ryan J, Zhang, Yuanchao, Jin, Run, Gaonkar, Krutika S, Shukla, Sangeeta, Rathi, Komal S, Hill, Dave, Lahiri, Aditya, Miller, Daniel P, Sickler, Alex, Keith, Kelsey, Blackden, Christopher, Chroni, Antonia, Brown, Miguel A, Kraya, Adam A, Koschmann, Carl J, Aldape, Kenneth, Huang, Xiaoyan, Rood, Brian R, Mason, Jennifer L, Trooskin, Gerri R, Abdullaev, Zied, Wang, Pei, Zhu, Yuankun, Farrow, Bailey K, Farrel, Alvin, Dybas, Joseph M, Zhong, Chuwei, Kuren, Nicholas Van, Zhang, Bo, Santi, Mariarita, Phul, Saksham, Chinwalla, Asif T, Resnick, Adam C, Diskin, Sharon J, Tasian, Sarah, Stefankiewicz, Stephanie, Maris, John M, Ennis, Brian M, Lueder, Matthew R, Naqvi, Ammar S, Coleman, Noel, Ma, Weiping, Taylor, Deanne, Rokita, Jo Lynne
Published in bioRxiv (11.07.2024)
Published in bioRxiv (11.07.2024)
Get full text
Journal Article
CP-17. NKX3.1 AS A PROGNOSTIC MARKER IN PEDIATRIC CRANIOPHARYNGIOMA
Arif, Shehbeel, Naqvi, Ammar S, Coyle, Anne M, Hollawell, Madison L, Storm, Phillip B, Resnick, Adam C, Koptyra, Mateusz P, Madsen, Peter J
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Get full text
Journal Article
BIOM-13. THE MIR-17/92 CO-EXPRESSED NETWORK IS ENRICHED IN AGGRESSIVE PEDIATRIC BRAIN TUMORS
Arif, Shehbeel, Rathi, Komal S, Naqvi, Ammar S, Coyle, Anne M, Hollawell, Madison L, Storm, Phillip B, Resnick, Adam C, Madsen, Peter J, Koptyra, Mateusz P
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Get full text
Journal Article
Pipeline for Discovering Neoepitopes Generated By Alternative Splicing in B-ALL
Zheng, Sisi, Naqvi, Ammar S., Bolton-Gillespie, Elisabeth, Asnani, Mukta, Hayer, Katharina, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Published in Blood (13.11.2019)
Published in Blood (13.11.2019)
Get full text
Journal Article
METB-14. INTEGRATED GERMLINE AND SOMATIC PROFILING OF PEDIATRIC BRAIN TUMORS REVEALS INCIDENTAL FINDINGS AND NOVEL TUMOR BIOLOGY
Corbett, Ryan J, Kaufman, Rebecca, McQuaid, Shelly W, Vaksman, Zalman, Phul, Saksham, Brown, Miguel A, Mason, Jennifer L, Desai, Heena, Hausler, Ryan, Naqvi, Ammar S, Chroni, Antonia, Geng, Zhuangzhuang, Zhang, Bo, Zhong, Chuwei, Zhu, Yuankun, Heath, Allison P, Li, Marilyn, Storm, Phillip B, Resnick, Adam C, Maxwell, Kara N, Bornhorst, Miriam, Cole, Kristina A, Waanders, Angela J, MacFarland, Suzanne P, Rokita, Jo Lynne, Diskin, Sharon J
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Get full text
Journal Article
Semi-Quantitative Analysis of CD19 and CD22 Expression in B-Lymphoblastic Leukemia and Implications for Targerted Immunotherapy
Rosenthal, Jaclyn, Naqvi, Ammar S., Wertheim, Gerald, Paessler, Michele, Rheingold, Susan R., Thomas-Tikhonenko, Andrei, Pillai, Vinodh
Published in Blood (08.12.2017)
Published in Blood (08.12.2017)
Get full text
Journal Article