Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
Kubo, Naoki, Ishii, Haruhiko, Xiong, Xiong, Bianco, Simona, Meitinger, Franz, Hu, Rong, Hocker, James D., Conte, Mattia, Gorkin, David, Yu, Miao, Li, Bin, Dixon, Jesse R., Hu, Ming, Nicodemi, Mario, Zhao, Huimin, Ren, Bing
Published in Nature structural & molecular biology (01.02.2021)
Published in Nature structural & molecular biology (01.02.2021)
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Journal Article
CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention
Pugacheva, Elena M., Kubo, Naoki, Loukinov, Dmitri, Tajmul, Md, Kang, Sungyun, Kovalchuk, Alexander L., Strunnikov, Alexander V., Zentner, Gabriel E., Ren, Bing, Lobanenkov, Victor V.
Published in Proceedings of the National Academy of Sciences - PNAS (28.01.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (28.01.2020)
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Journal Article
Cleaner fish recognize self in a mirror via self-face recognition like humans
Kohda, Masanori, Bshary, Redouan, Kubo, Naoki, Awata, Satoshi, Sowersby, Will, Kawasaka, Kento, Kobayashi, Taiga, Sogawa, Shumpei
Published in Proceedings of the National Academy of Sciences - PNAS (14.02.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (14.02.2023)
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Journal Article
Further evidence for the capacity of mirror self-recognition in cleaner fish and the significance of ecologically relevant marks
Kohda, Masanori, Sogawa, Shumpei, Jordan, Alex L, Kubo, Naoki, Awata, Satoshi, Satoh, Shun, Kobayashi, Taiga, Fujita, Akane, Bshary, Redouan
Published in PLoS biology (17.02.2022)
Published in PLoS biology (17.02.2022)
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Journal Article
DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis
Kubo, Naoki, Toh, Hidehiro, Shirane, Kenjiro, Shirakawa, Takayuki, Kobayashi, Hisato, Sato, Tetsuya, Sone, Hidetoshi, Sato, Yasuyuki, Tomizawa, Shin-ichi, Tsurusaki, Yoshinori, Shibata, Hiroki, Saitsu, Hirotomo, Suzuki, Yutaka, Matsumoto, Naomichi, Suyama, Mikita, Kono, Tomohiro, Ohbo, Kazuyuki, Sasaki, Hiroyuki
Published in BMC genomics (20.08.2015)
Published in BMC genomics (20.08.2015)
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Journal Article
Polycomb protein SCML2 facilitates H3K27me3 to establish bivalent domains in the male germline
Maezawa, So, Hasegawa, Kazuteru, Yukawa, Masashi, Kubo, Naoki, Sakashita, Akihiko, Alavattam, Kris G., Sin, Ho-Su, Kartashov, Andrey V., Sasaki, Hiroyuki, Barski, Artem, Namekawa, Satoshi H.
Published in Proceedings of the National Academy of Sciences - PNAS (08.05.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (08.05.2018)
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Journal Article
Intrinsic and Extrinsic Regulation of PD-L2 Expression in Oncogene-Driven Non–Small Cell Lung Cancer
Shibahara, Daisuke, Tanaka, Kentaro, Iwama, Eiji, Kubo, Naoki, Ota, Keiichi, Azuma, Koichi, Harada, Taishi, Fujita, Jiro, Nakanishi, Yoichi, Okamoto, Isamu
Published in Journal of thoracic oncology (01.07.2018)
Published in Journal of thoracic oncology (01.07.2018)
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Journal Article
Longitudinal effects of estrogen on mandibular growth and changes in cartilage during the growth period in rats
Kubo, Naoki, Awada, Tetsuya, Hirose, Naoto, Yanoshita, Makoto, Takano, Mami, Nishiyama, Sayuri, Tsuboi, Eri, Kita, Daiki, Ito, Shota, Nakatani, Ayaka, Onishi, Azusa, Asakawa, Yuki, Tanimoto, Kotaro
Published in Developmental biology (01.12.2022)
Published in Developmental biology (01.12.2022)
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Journal Article
Phylogenetic, population structure, and population demographic analyses reveal that Vicia sepium in Japan is native and not introduced
Tamaki, Ichiro, Mizuno, Mizuo, Ohtsuki, Tatsuo, Shutoh, Kohtaroh, Tabata, Ryoichi, Tsunamoto, Yoshihiro, Suyama, Yoshihisa, Nakajima, Yusuke, Kubo, Naoki, Ito, Takeru, Noma, Naohiko, Harada, Emiko
Published in Scientific reports (25.11.2023)
Published in Scientific reports (25.11.2023)
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Journal Article
Performance characterization of the Inveon preclinical small-animal PET/SPECT/CT system for multimodality imaging
Magota, Keiichi, Kubo, Naoki, Kuge, Yuji, Nishijima, Ken-ichi, Zhao, Songji, Tamaki, Nagara
Published in European journal of nuclear medicine and molecular imaging (01.04.2011)
Published in European journal of nuclear medicine and molecular imaging (01.04.2011)
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Journal Article
Paired genetic analysis by next‐generation sequencing of lung cancer and associated idiopathic pulmonary fibrosis
Otsubo, Kohei, Iwama, Eiji, Ijichi, Kayo, Kubo, Naoki, Yoneshima, Yasuto, Inoue, Hiroyuki, Tanaka, Kentaro, Osoegawa, Atsushi, Tagawa, Tetsuzo, Nakanishi, Yoichi, Okamoto, Isamu
Published in Cancer science (01.07.2020)
Published in Cancer science (01.07.2020)
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Journal Article
The role of semaphorin 3A on chondrogenic differentiation
Tsuboi, Eri, Asakawa, Yuki, Hirose, Naoto, Yanoshita, Makoto, Sumi, Chikako, Takano, Mami, Onishi, Azusa, Nishiyama, Sayuri, Kubo, Naoki, Kita, Daiki, Tanimoto, Kotaro
Published in In vitro cellular & developmental biology. Animal (2024)
Published in In vitro cellular & developmental biology. Animal (2024)
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Journal Article
Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing
Toh, Hidehiro, Shirane, Kenjiro, Miura, Fumihito, Kubo, Naoki, Ichiyanagi, Kenji, Hayashi, Katsuhiko, Saitou, Mitinori, Suyama, Mikita, Ito, Takashi, Sasaki, Hiroyuki
Published in BMC genomics (05.01.2017)
Published in BMC genomics (05.01.2017)
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Journal Article
Proton-Driven Intercalation and Ion Substitution Utilizing Solid-State Electrochemical Reaction
Fujioka, Masaya, Wu, Chuanbao, Kubo, Naoki, Zhao, Gaoyang, Inoishi, Atsushi, Okada, Shigeto, Demura, Satoshi, Sakata, Hideaki, Ishimaru, Manabu, Kaiju, Hideo, Nishii, Junji
Published in Journal of the American Chemical Society (13.12.2017)
Published in Journal of the American Chemical Society (13.12.2017)
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Journal Article