RNA modification mapping with JACUSA2
Piechotta, Michael, Naarmann-de Vries, Isabel S, Wang, Qi, Altmüller, Janine, Dieterich, Christoph
Published in Genome Biology (16.05.2022)
Published in Genome Biology (16.05.2022)
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Journal Article
On the optimal design of metabolic RNA labeling experiments
Uvarovskii, Alexey, Naarmann-de Vries, Isabel S, Dieterich, Christoph
Published in PLoS computational biology (01.08.2019)
Published in PLoS computational biology (01.08.2019)
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Journal Article
Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis
Naarmann-de Vries, Isabel S, Senatore, Roberta, Moritz, Bodo, Marx, Gernot, Urlaub, Henning, Niessing, Dierk, Ostareck, Dirk H, Ostareck-Lederer, Antje
Published in Nucleic acids research (06.04.2021)
Published in Nucleic acids research (06.04.2021)
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Journal Article
Identification of RNA-binding Proteins in Macrophages by Interactome Capture
Liepelt, Anke, Naarmann-de Vries, Isabel S., Simons, Nadine, Eichelbaum, Katrin, Föhr, Sophia, Archer, Stuart K., Castello, Alfredo, Usadel, Björn, Krijgsveld, Jeroen, Preiss, Thomas, Marx, Gernot, Hentze, Matthias W., Ostareck, Dirk H., Ostareck-Lederer, Antje
Published in Molecular & cellular proteomics (01.08.2016)
Published in Molecular & cellular proteomics (01.08.2016)
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Journal Article
Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2
Naarmann-de Vries, Isabel S., Zorbas, Christiane, Lemsara, Amina, Piechotta, Michael, Ernst, Felix G. M., Wacheul, Ludivine, Lafontaine, Denis L. J., Dieterich, Christoph
Published in RNA biology (31.12.2023)
Published in RNA biology (31.12.2023)
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Journal Article
Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI
Boileau, Etienne, Li, Xue, Naarmann-de Vries, Isabel S, Becker, Christian, Casper, Ramona, Altmüller, Janine, Leuschner, Florian, Dieterich, Christoph
Published in Frontiers in genetics (22.07.2022)
Published in Frontiers in genetics (22.07.2022)
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Journal Article
Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum
Staudacher, Jonas J, Naarmann-de Vries, Isabel S, Ujvari, Stefanie J, Klinger, Bertram, Kasim, Mumtaz, Benko, Edgar, Ostareck-Lederer, Antje, Ostareck, Dirk H, Bondke Persson, Anja, Lorenzen, Stephan, Meier, Jochen C, Blüthgen, Nils, Persson, Pontus B, Henrion-Caude, Alexandra, Mrowka, Ralf, Fähling, Michael
Published in Nucleic acids research (31.03.2015)
Published in Nucleic acids research (31.03.2015)
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Journal Article
P23 Acts as Functional RBP in the Macrophage Inflammation Response
de Vries, Sebastian, Benes, Vladimir, Naarmann-de Vries, Isabel S., Rücklé, Cornelia, Zarnack, Katharina, Marx, Gernot, Ostareck, Dirk H., Ostareck-Lederer, Antje
Published in Frontiers in molecular biosciences (11.06.2021)
Published in Frontiers in molecular biosciences (11.06.2021)
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Journal Article
Characterizing alternative splicing effects on protein interaction networks with LINDA
Gjerga, Enio, Naarmann-de Vries, Isabel S, Dieterich, Christoph
Published in Bioinformatics (Oxford, England) (30.06.2023)
Published in Bioinformatics (Oxford, England) (30.06.2023)
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Journal Article
Nanopore Detection of METTL3-Dependent m6A-Modified mRNA Reveals a New Mechanism Regulating Cardiomyocyte Mitochondrial Metabolism
Rabolli, Charles P, Naarmann-de Vries, Isabel S, Makarewich, Catherine A, Baskin, Kedryn K, Dieterich, Christoph, Accornero, Federica
Published in Circulation (New York, N.Y.) (16.04.2024)
Published in Circulation (New York, N.Y.) (16.04.2024)
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Journal Article
Adaptive sampling for nanopore direct RNA-sequencing
Naarmann-de Vries, Isabel S, Gjerga, Enio, Gandor, Catharina L A, Dieterich, Christoph
Published in RNA (Cambridge) (01.12.2023)
Published in RNA (Cambridge) (01.12.2023)
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Journal Article
Insight into the mechanism of AML del(9q) progression: hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)
Rahn, Kerstin, Abdallah, Ali T., Gan, Lin, Herbrich, Shelley, Sonntag, Roland, Benitez, Oscar, Malaney, Prerna, Zhang, Xiaorui, Rodriguez, Ashely G., Brottem, Jared, Marx, Gernot, Brümmendorf, Tim H., Ostareck, Dirk H., Ostareck-Lederer, Antje, Crysandt, Martina, Post, Sean M., Naarmann-de Vries, Isabel S.
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.03.2024)
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.03.2024)
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Journal Article