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Gene regulatory network inference during cell fate decisions by perturbation strategies
Hu, Qing, Lu, Xiaoqi, Xue, Zhuozhen, Wang, Ruiqi
Published in NPJ systems biology and applications (04.03.2025)
Published in NPJ systems biology and applications (04.03.2025)
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Endosomal pH is an evolutionarily conserved driver of phenotypic plasticity in colorectal cancer
Prasad, Hari, BV, Harshavardhan, Subbalakshmi, Ayalur Raghu, Mandal, Susmita, Jolly, Mohit Kumar, Visweswariah, Sandhya S.
Published in NPJ systems biology and applications (19.12.2024)
Published in NPJ systems biology and applications (19.12.2024)
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Bridging silicon and carbon worlds with digital twins and on-chip systems in drug discovery
Akbarialiabad, Hossein, Seyyedi, Mahdiyeh Sadat, Paydar, Shahram, Habibzadeh, Adrina, Haghighi, Alireza, Kvedar, Joseph C.
Published in NPJ systems biology and applications (19.12.2024)
Published in NPJ systems biology and applications (19.12.2024)
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Loss formulations for assumption-free neural inference of SDE coefficient functions
Vaisband, Marc, von Bornhaupt, Valentin, Schmid, Nina, Abulizi, Izdar, Hasenauer, Jan
Published in NPJ systems biology and applications (01.03.2025)
Published in NPJ systems biology and applications (01.03.2025)
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Integrative systems biology framework discovers common gene regulatory signatures in mechanistically distinct inflammatory skin diseases
Mishra, Bharat, Gou, Yifei, Tan, Zhengzhi, Wang, Yiqing, Hu, Getian, Athar, Mohammad, Mukhtar, M. Shahid
Published in NPJ systems biology and applications (27.02.2025)
Published in NPJ systems biology and applications (27.02.2025)
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YAP/TAZ drives Notch and angiogenesis mechanoregulation in silico
Passier, Margot, Bentley, Katie, Loerakker, Sandra, Ristori, Tommaso
Published in NPJ systems biology and applications (05.10.2024)
Published in NPJ systems biology and applications (05.10.2024)
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Quantifying the optimal strategy of population control of quorum sensing network in Escherichia coli
Li, Xiang, Jin, Jun, Zhang, Xiaocui, Xu, Fei, Zhong, Jinjin, Yin, Zhiyong, Qi, Hong, Wang, Zhaoshou, Shuai, Jianwei
Published in NPJ systems biology and applications (02.09.2021)
Published in NPJ systems biology and applications (02.09.2021)
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Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods
Balzerani, Francesco, Hinojosa-Nogueira, Daniel, Cendoya, Xabier, Blasco, Telmo, Pérez-Burillo, Sergio, Apaolaza, Iñigo, Francino, M. Pilar, Rufián-Henares, José Ángel, Planes, Francisco J.
Published in NPJ systems biology and applications (12.07.2022)
Published in NPJ systems biology and applications (12.07.2022)
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Morphological entropy encodes cellular migration strategies on multiple length scales
Liu, Yanping, Jiao, Yang, Fan, Qihui, Li, Xinwei, Liu, Zhichao, Qin, Dui, Hu, Jun, Liu, Liyu, Shuai, Jianwei, Li, Zhangyong
Published in NPJ systems biology and applications (07.03.2024)
Published in NPJ systems biology and applications (07.03.2024)
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Mathematical model of the inflammatory response to acute and prolonged lipopolysaccharide exposure in humans
Relouw, Freek J. A., Kox, Matthijs, Taal, H. Rob, Koch, Birgit C. P., Prins, Menno W. J., van Riel, Natal A. W.
Published in NPJ systems biology and applications (05.12.2024)
Published in NPJ systems biology and applications (05.12.2024)
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A system-level model reveals that transcriptional stochasticity is required for hematopoietic stem cell differentiation
Herrera, Joel, Bensussen, Antonio, García-Gómez, Mónica L., Garay-Arroyo, Adriana, Álvarez-Buylla, Elena R.
Published in NPJ systems biology and applications (05.12.2024)
Published in NPJ systems biology and applications (05.12.2024)
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Mathematical modeling of multicellular tumor spheroids quantifies inter-patient and intra-tumor heterogeneity
Malik, Adam A., Nguyen, Kyle C., Nardini, John T., Krona, Cecilia C., Flores, Kevin B., Nelander, Sven
Published in NPJ systems biology and applications (15.02.2025)
Published in NPJ systems biology and applications (15.02.2025)
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Cross-species transcriptomics translation reveals a role for the unfolded protein response in Mycobacterium tuberculosis infection
Pullen, Krista M., Finethy, Ryan, Ko, Seung-Hyun B., Reames, Charlotte J., Sassetti, Christopher M., Lauffenburger, Douglas A.
Published in NPJ systems biology and applications (15.02.2025)
Published in NPJ systems biology and applications (15.02.2025)
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Systems modeling of oncogenic G-protein and GPCR signaling reveals unexpected differences in downstream pathway activation
Trogdon, Michael, Abbott, Kodye, Arang, Nadia, Lande, Kathryn, Kaur, Navneet, Tong, Melinda, Bakhoum, Mathieu, Gutkind, J. Silvio, Stites, Edward C.
Published in NPJ systems biology and applications (16.07.2024)
Published in NPJ systems biology and applications (16.07.2024)
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Spatial cell graph analysis reveals skin tissue organization characteristic for cutaneous T cell lymphoma
Sarkar, Suryadipto, Möller, Anna, Hartebrodt, Anne, Erdmann, Michael, Ostalecki, Christian, Baur, Andreas, Blumenthal, David B.
Published in NPJ systems biology and applications (02.12.2024)
Published in NPJ systems biology and applications (02.12.2024)
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Integrative temporal multi-omics reveals uncoupling of transcriptome and proteome during human T cell activation
Weerakoon, Harshi, Mohamed, Ahmed, Wong, Yide, Chen, Jinjin, Senadheera, Bhagya, Haigh, Oscar, Watkins, Thomas S., Kazakoff, Stephen, Mukhopadhyay, Pamela, Mulvenna, Jason, Miles, John J., Hill, Michelle M., Lepletier, Ailin
Published in NPJ systems biology and applications (28.02.2024)
Published in NPJ systems biology and applications (28.02.2024)
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