Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies
Mende, Daniel R, Aylward, Frank O, Eppley, John M, Nielsen, Torben N, DeLong, Edward F
Published in Frontiers in microbiology (11.02.2016)
Published in Frontiers in microbiology (11.02.2016)
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Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface
Goff, Jennifer L, Szink, Elizabeth G, Durrence, Konnor L, Lui, Lauren M, Nielsen, Torben N, Kuehl, Jennifer V, Hunt, Kristopher A, Chandonia, John-Marc, Huang, Jiawen, Thorgersen, Michael P, Poole, 2nd, Farris L, Stahl, David A, Chakraborty, Romy, Deutschbauer, Adam M, Arkin, Adam P, Adams, Michael W W
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Published in Environmental microbiome (26.04.2024)
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The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella
Adler, Benjamin A, Kazakov, Alexey E, Zhong, Crystal, Liu, Hualan, Kutter, Elizabeth, Lui, Lauren M, Nielsen, Torben N, Carion, Heloise, Deutschbauer, Adam M, Mutalik, Vivek K, Arkin, Adam P
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Published in Microbiology (Society for General Microbiology) (01.12.2021)
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Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone
Wu, Xiaoqin, Gushgari-Doyle, Sara, Lui, Lauren M, Hendrickson, Andrew J, Liu, Yina, Jagadamma, Sindhu, Nielsen, Torben N, Justice, Nicholas B, Simmons, Tuesday, Hess, Nancy J, Joyner, Dominique C, Hazen, Terry C, Arkin, Adam P, Chakraborty, Romy
Published in Applied and environmental microbiology (28.06.2023)
Published in Applied and environmental microbiology (28.06.2023)
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Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
Carim, Sean, Azadeh, Ashley L, Kazakov, Alexey E, Price, Morgan N, Walian, Peter J, Lui, Lauren M, Nielsen, Torben N, Chakraborty, Romy, Deutschbauer, Adam M, Mutalik, Vivek K, Arkin, Adam P
Published in The ISME Journal (01.08.2021)
Published in The ISME Journal (01.08.2021)
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Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide
Hunt, Kristopher A., Carr, Alex V., Otwell, Anne E., Valenzuela, Jacob J., Walker, Kathleen S., Dixon, Emma R., Lui, Lauren M., Nielsen, Torben N., Bowman, Samuel, von Netzer, Frederick, Moon, Ji-Won, Schadt, Christopher W., Rodriguez Jr, Miguel, Lowe, Kenneth, Joyner, Dominique, Davis, Katherine J., Wu, Xiaoqin, Chakraborty, Romy, Fields, Matthew W., Zhou, Jizhong, Hazen, Terry C., Arkin, Adam P., Wankel, Scott D., Baliga, Nitin S., Stahl, David A.
Published in Environmental science & technology (23.04.2024)
Published in Environmental science & technology (23.04.2024)
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Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress
Chen, Mingfei, Trotter, Valentine V, Walian, Peter J, Chen, Yan, Lopez, Romario, Lui, Lauren M, Nielsen, Torben N, Malana, Ria Gracielle, Thorgersen, Michael P, Hendrickson, Andrew J, Carion, Héloïse, Deutschbauer, Adam M, Petzold, Christopher J, Smith, Heidi J, Arkin, Adam P, Adams, Michael W W, Fields, Matthew W, Chakraborty, Romy
Published in The ISME Journal (08.01.2024)
Published in The ISME Journal (08.01.2024)
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Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics
Thorgersen, Michael P, Xue, Jingchuan, Majumder, Erica L W, Trotter, Valentine V, Ge, Xiaoxuan, Poole, 2nd, Farris L, Owens, Trenton K, Lui, Lauren M, Nielsen, Torben N, Arkin, Adam P, Deutschbauer, Adam M, Siuzdak, Gary, Adams, Michael W W
Published in Applied and environmental microbiology (14.10.2021)
Published in Applied and environmental microbiology (14.10.2021)
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Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments
Goff, Jennifer L., Szink, Elizabeth G., Thorgersen, Michael P., Putt, Andrew D., Fan, Yupeng, Lui, Lauren M., Nielsen, Torben N., Hunt, Kristopher A., Michael, Jonathan P., Wang, Yajiao, Ning, Daliang, Fu, Ying, Van Nostrand, Joy D., Poole, Farris L., Chandonia, John‐Marc, Hazen, Terry C., Stahl, David A., Zhou, Jizhong, Arkin, Adam P., Adams, Michael W. W.
Published in Environmental microbiology (01.11.2022)
Published in Environmental microbiology (01.11.2022)
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Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
Gushgari-Doyle, Sara, Lui, Lauren M, Nielsen, Torben N, Wu, Xiaoqin, Malana, Ria G, Hendrickson, Andrew J, Carion, Heloise, Poole, 2nd, Farris L, Adams, Michael W W, Arkin, Adam P, Chakraborty, Romy
Published in ISME Communications (30.03.2022)
Published in ISME Communications (30.03.2022)
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Mixed waste contamination selects for a mobile genetic element population enriched in multiple heavy metal resistance genes
Goff, Jennifer L, Lui, Lauren M, Nielsen, Torben N, Poole, Farris L, Smith, Heidi J, Walker, Kathleen F, Hazen, Terry C, Fields, Matthew W, Arkin, Adam P, Adams, Michael W W
Published in ISME Communications (09.05.2024)
Published in ISME Communications (09.05.2024)
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Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment
Goff, Jennifer L, Lui, Lauren M, Nielsen, Torben N, Thorgersen, Michael P, Szink, Elizabeth G, Chandonia, John-Marc, Poole, 2nd, Farris L, Zhou, Jizhong, Hazen, Terry C, Arkin, Adam P, Adams, Michael W W
Published in Microbiology resource announcements (19.05.2022)
Published in Microbiology resource announcements (19.05.2022)
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Deciphering Microbial Metal Toxicity Responses using RB-TnSeq and Activity-Based Metabolomics
Thorgersen, Michael P., Xue, Jingchuan, Majumder, Erica L.W., Trotter, Valentine V., Ge, Xiaoxuan, Poole, Farris L., Owens, Trenton K., Lui, Lauren M., Nielsen, Torben N., Arkin, Adam P., Deutschbauer, Adam M., Siuzdak, Gary, Adams, Michael W.
Published in Applied and environmental microbiology (25.08.2021)
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Published in Applied and environmental microbiology (25.08.2021)
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The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella
Adler, Benjamin A., Kazakov, Alexey E., Zhong, Crystal, Liu, Hualan, Kutter, Elizabeth, Lui, Lauren M., Nielsen, Torben N., Carion, Heloise, Deutschbauer, Adam M., Mutalik, Vivek K., Arkin, Adam P.
Published in Microbiology (Society for General Microbiology) (15.12.2021)
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Published in Microbiology (Society for General Microbiology) (15.12.2021)
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Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
Carim, Sean, Azadeh, Ashley L., Kazakov, Alexey E., Price, Morgan N., Walian, Peter J., Lui, Lauren M., Nielsen, Torben N., Chakraborty, Romy, Deutschbauer, Adam M., Mutalik, Vivek K., Arkin, Adam P.
Published in The ISME Journal (01.03.2021)
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Published in The ISME Journal (01.03.2021)
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Novel candidate taxa contribute to key metabolic processes in Fennoscandian shield deep groundwaters
Dopson, Mark, Somee, Maryam Rezaei, González-Rosales, Carolina, Lui, Lauren M, Turner, Stephanie, Buck, Moritz, Nilsson, Emelie, Westmeijer, George, Ashoor, Kamal, Nielsen, Torben N, Mehrshad, Maliheh, Bertilsson, Stefan
Published in ISME Communications (23.09.2024)
Published in ISME Communications (23.09.2024)
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