An atlas of human metabolism
Robinson, Jonathan L, Kocabaş, Pınar, Wang, Hao, Cholley, Pierre-Etienne, Cook, Daniel, Nilsson, Avlant, Anton, Mihail, Ferreira, Raphael, Domenzain, Iván, Billa, Virinchi, Limeta, Angelo, Hedin, Alex, Gustafsson, Johan, Kerkhoven, Eduard J, Svensson, L Thomas, Palsson, Bernhard O, Mardinoglu, Adil, Hansson, Lena, Uhlén, Mathias, Nielsen, Jens
Published in Science signaling (24.03.2020)
Published in Science signaling (24.03.2020)
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Journal Article
Simulation of wheel–rail contact and damage in switches & crossings
Johansson, Anders, Pålsson, Björn, Ekh, Magnus, Nielsen, Jens C.O., Ander, Mats K.A., Brouzoulis, Jim, Kassa, Elias
Published in Wear (18.05.2011)
Published in Wear (18.05.2011)
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Journal Article
Conference Proceeding
Understanding the interactions between bacteria in the human gut through metabolic modeling
Shoaie, Saeed, Karlsson, Fredrik, Mardinoglu, Adil, Nookaew, Intawat, Bordel, Sergio, Nielsen, Jens
Published in Scientific reports (28.08.2013)
Published in Scientific reports (28.08.2013)
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Journal Article
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Domenzain, Iván, Sánchez, Benjamín, Anton, Mihail, Kerkhoven, Eduard J., Millán-Oropeza, Aarón, Henry, Céline, Siewers, Verena, Morrissey, John P., Sonnenschein, Nikolaus, Nielsen, Jens
Published in Nature communications (30.06.2022)
Published in Nature communications (30.06.2022)
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Journal Article
Strategies and challenges with the microbial conversion of methanol to high‐value chemicals
Zhan, Chunjun, Li, Xiaowei, Yang, Yankun, Nielsen, Jens, Bai, Zhonghu, Chen, Yun
Published in Biotechnology and bioengineering (01.10.2021)
Published in Biotechnology and bioengineering (01.10.2021)
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Journal Article
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Zrimec, Jan, Börlin, Christoph S., Buric, Filip, Muhammad, Azam Sheikh, Chen, Rhongzen, Siewers, Verena, Verendel, Vilhelm, Nielsen, Jens, Töpel, Mats, Zelezniak, Aleksej
Published in Nature communications (01.12.2020)
Published in Nature communications (01.12.2020)
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Journal Article
Modelling approaches for studying the microbiome
Kumar, Manish, Ji, Boyang, Zengler, Karsten, Nielsen, Jens
Published in Nature microbiology (01.08.2019)
Published in Nature microbiology (01.08.2019)
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Journal Article
A Systematic Investigation of the Malignant Functions and Diagnostic Potential of the Cancer Secretome
Robinson, Jonathan L., Feizi, Amir, Uhlén, Mathias, Nielsen, Jens
Published in Cell reports (Cambridge) (05.03.2019)
Published in Cell reports (Cambridge) (05.03.2019)
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Journal Article
HRS Expert Consensus Statement on the Diagnosis and Management of Arrhythmias Associated With Cardiac Sarcoidosis
Birnie, David H., MD (Chair), Sauer, William H., MD, FHRS, CCDS (Chair), Bogun, Frank, MD, Cooper, Joshua M., MD, FHRS, Culver, Daniel A., DO, Duvernoy, Claire S., MD, Judson, Marc A., MD, Kron, Jordana, MD, Mehta, Davendra, MD, PhD, FHRS, Cosedis Nielsen, Jens, MD, Patel, Amit R., MD, Ohe, Tohru, MD, FHRS, Raatikainen, Pekka, MD, Soejima, Kyoko, MD
Published in Heart rhythm (01.07.2014)
Published in Heart rhythm (01.07.2014)
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Journal Article
Conference Proceeding
Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast
Yu, Rosemary, Campbell, Kate, Pereira, Rui, Björkeroth, Johan, Qi, Qi, Vorontsov, Egor, Sihlbom, Carina, Nielsen, Jens
Published in Nature communications (20.04.2020)
Published in Nature communications (20.04.2020)
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Journal Article
Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
Li, Gang, Rabe, Kersten S, Nielsen, Jens, Engqvist, Martin K. M
Published in ACS synthetic biology (21.06.2019)
Published in ACS synthetic biology (21.06.2019)
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Journal Article
Industrial systems biology and its impact on synthetic biology of yeast cell factories
Fletcher, Eugene, Krivoruchko, Anastasia, Nielsen, Jens
Published in Biotechnology and bioengineering (01.06.2016)
Published in Biotechnology and bioengineering (01.06.2016)
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Journal Article
Rapid Quantification of Yeast Lipid using Microwave-Assisted Total Lipid Extraction and HPLC-CAD
Khoomrung, Sakda, Chumnanpuen, Pramote, Jansa-Ard, Suwanee, Ståhlman, Marcus, Nookaew, Intawat, Borén, Jan, Nielsen, Jens
Published in Analytical chemistry (Washington) (21.05.2013)
Published in Analytical chemistry (Washington) (21.05.2013)
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Journal Article
Yeast increases glycolytic flux to support higher growth rates accompanied by decreased metabolite regulation and lower protein phosphorylation
Chen, Min, Xie, Tingting, Li, Huan, Zhuang, Yingping, Xia, Jianye, Nielsen, Jens
Published in Proceedings of the National Academy of Sciences - PNAS (20.06.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (20.06.2023)
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Journal Article
Reconfiguration of the reductive TCA cycle enables high-level succinic acid production by Yarrowia lipolytica
Cui, Zhiyong, Zhong, Yutao, Sun, Zhijie, Jiang, Zhennan, Deng, Jingyu, Wang, Qian, Nielsen, Jens, Hou, Jin, Qi, Qingsheng
Published in Nature communications (20.12.2023)
Published in Nature communications (20.12.2023)
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Journal Article
BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
Gustafsson, Johan, Robinson, Jonathan, Nielsen, Jens, Pachter, Lior
Published in Genome Biology (08.06.2021)
Published in Genome Biology (08.06.2021)
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Journal Article
Moderate Expression of SEC16 Increases Protein Secretion by Saccharomyces cerevisiae
Bao, Jichen, Huang, Mingtao, Petranovic, Dina, Nielsen, Jens
Published in Applied and environmental microbiology (15.07.2017)
Published in Applied and environmental microbiology (15.07.2017)
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