Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes
Bidkhori, Gholamreza, Benfeitas, Rui, Klevstig, Martina, Zhang, Cheng, Nielsen, Jens, Uhlen, Mathias, Boren, Jan, Mardinoglu, Adil
Published in Proceedings of the National Academy of Sciences - PNAS (11.12.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (11.12.2018)
Get full text
Journal Article
Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
Jenjaroenpun, Piroon, Wongsurawat, Thidathip, Pereira, Rui, Patumcharoenpol, Preecha, Ussery, David W, Nielsen, Jens, Nookaew, Intawat
Published in Nucleic acids research (20.04.2018)
Published in Nucleic acids research (20.04.2018)
Get full text
Journal Article
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Wang, Hao, Marcišauskas, Simonas, Sánchez, Benjamín J, Domenzain, Iván, Hermansson, Daniel, Agren, Rasmus, Nielsen, Jens, Kerkhoven, Eduard J
Published in PLoS computational biology (01.10.2018)
Published in PLoS computational biology (01.10.2018)
Get full text
Journal Article
Prediction of plastic deformation and wear in railway crossings – Comparing the performance of two rail steel grades
Skrypnyk, Rostyslav, Ekh, Magnus, Nielsen, Jens C.O., Pålsson, Björn A.
Published in Wear (15.06.2019)
Published in Wear (15.06.2019)
Get full text
Journal Article
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
Zhang, Jie, Petersen, Søren D., Radivojevic, Tijana, Ramirez, Andrés, Pérez-Manríquez, Andrés, Abeliuk, Eduardo, Sánchez, Benjamín J., Costello, Zak, Chen, Yu, Fero, Michael J., Martin, Hector Garcia, Nielsen, Jens, Keasling, Jay D., Jensen, Michael K.
Published in Nature communications (25.09.2020)
Published in Nature communications (25.09.2020)
Get full text
Journal Article
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
Lu, Hongzhong, Li, Feiran, Sánchez, Benjamín J., Zhu, Zhengming, Li, Gang, Domenzain, Iván, Marcišauskas, Simonas, Anton, Petre Mihail, Lappa, Dimitra, Lieven, Christian, Beber, Moritz Emanuel, Sonnenschein, Nikolaus, Kerkhoven, Eduard J., Nielsen, Jens
Published in Nature communications (08.08.2019)
Published in Nature communications (08.08.2019)
Get full text
Journal Article
Altered sterol composition renders yeast thermotolerant
Caspeta, Luis, Chen, Yun, Ghiaci, Payam, Feizi, Amir, Buskov, Steen, Hallström, Björn M., Petranovic, Dina, Nielsen, Jens
Published in Science (American Association for the Advancement of Science) (03.10.2014)
Published in Science (American Association for the Advancement of Science) (03.10.2014)
Get full text
Journal Article