Temporal Stability and Composition of the Ocular Surface Microbiome
Ozkan, Jerome, Nielsen, Shaun, Diez-Vives, Cristina, Coroneo, Minas, Thomas, Torsten, Willcox, Mark
Published in Scientific reports (29.08.2017)
Published in Scientific reports (29.08.2017)
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Journal Article
Predicting the HMA-LMA Status in Marine Sponges by Machine Learning
Moitinho-Silva, Lucas, Steinert, Georg, Nielsen, Shaun, Hardoim, Cristiane C P, Wu, Yu-Chen, McCormack, Grace P, López-Legentil, Susanna, Marchant, Roman, Webster, Nicole, Thomas, Torsten, Hentschel, Ute
Published in Frontiers in microbiology (08.05.2017)
Published in Frontiers in microbiology (08.05.2017)
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Journal Article
Microbiome patterns across the gastrointestinal tract of the rabbitfish Siganus fuscescens
Nielsen, Shaun, Wilkes Walburn, Jackson, Vergés, Adriana, Thomas, Torsten, Egan, Suhelen
Published in PeerJ (San Francisco, CA) (17.05.2017)
Published in PeerJ (San Francisco, CA) (17.05.2017)
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Journal Article
Genotype to phenotype: Diet-by-mitochondrial DNA haplotype interactions drive metabolic flexibility and organismal fitness
Aw, Wen C, Towarnicki, Samuel G, Melvin, Richard G, Youngson, Neil A, Garvin, Michael R, Hu, Yifang, Nielsen, Shaun, Thomas, Torsten, Pickford, Russell, Bustamante, Sonia, Vila-Sanjurjo, Antón, Smyth, Gordon K, Ballard, J William O
Published in PLoS genetics (06.11.2018)
Published in PLoS genetics (06.11.2018)
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Journal Article
Microbial communities in marine sediments modify success of an invasive macrophyte
Gribben, Paul E, Nielsen, Shaun, Seymour, Justin R, Bradley, Daniel J, West, Matthew N, Thomas, Torsten
Published in Scientific reports (29.08.2017)
Published in Scientific reports (29.08.2017)
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Journal Article
The Electrochemical Properties of Biochars and How They Affect Soil Redox Properties and Processes
Joseph, Stephen, Husson, Olivier, Graber, Ellen, van Zwieten, Lukas, Taherymoosavi, Sara, Thomas, Torsten, Nielsen, Shaun, Ye, Jun, Pan, Genxing, Chia, Chee, Munroe, Paul, Allen, Jessica, Lin, Yun, Fan, Xiaorong, Donne, Scott
Published in Agronomy (01.09.2015)
Published in Agronomy (01.09.2015)
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Journal Article
Book Review
Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett's esophagus
Deshpande, Nandan P, Riordan, Stephen M, Gorman, Claire J, Nielsen, Shaun, Russell, Tonia L, Correa-Ospina, Carolina, Fernando, Bentotage S M, Waters, Shafagh A, Castaño-Rodríguez, Natalia, Man, Si Ming, Tedla, Nicodemus, Wilkins, Marc R, Kaakoush, Nadeem O
Published in Genome medicine (19.08.2021)
Published in Genome medicine (19.08.2021)
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Journal Article
rCRUX: A rapid and versatile tool for generating metabarcoding reference libraries in R
Curd, Emily E., Gal, Luna, Gallego, Ramon, Silliman, Katherine, Nielsen, Shaun, Gold, Zachary
Published in Environmental DNA (Hoboken, N.J.) (01.01.2024)
Published in Environmental DNA (Hoboken, N.J.) (01.01.2024)
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Journal Article
Developing More Effective Enhanced Biochar Fertilisers for Improvement of Pepper Yield and Quality
YAO, Chunxue, JOSEPH, Stephen, LI, Lianqing, PAN, Genxing, LIN, Yun, MUNROE, Paul, PACE, Ben, TAHERYMOOSAVI, Sarasadat, VAN ZWIETEN, Lukas, THOMAS, Torsten, NIELSEN, Shaun, YE, Jun, DONNE, Scott
Published in Pedosphere (01.10.2015)
Published in Pedosphere (01.10.2015)
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Journal Article
Feeding Biochar to Cows: An Innovative Solution for Improving Soil Fertility and Farm Productivity
JOSEPH, Stephen, POW, Doug, DAWSON, Kathy, MITCHELL, David R.G., RAWAL, Aditya, HOOK, James, TAHERYMOOSAVI, Sarasadat, VAN ZWIETEN, Lukas, RUST, Joshua, DONNE, Scott, MUNROE, Paul, PACE, Ben, GRABER, Ellen, THOMAS, Torsten, NIELSEN, Shaun, YE, Jun, LIN, Yun, PAN, Genxing, LI, Lianqing, SOLAIMAN, Zakaria M.
Published in Pedosphere (01.10.2015)
Published in Pedosphere (01.10.2015)
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Journal Article
Comparative analysis of the microbial communities in agricultural soil amended with enhanced biochars or traditional fertilisers
Nielsen, Shaun, Minchin, Tom, Kimber, Stephen, van Zwieten, Lukas, Gilbert, Jack, Munroe, Paul, Joseph, Stephen, Thomas, Torsten
Published in Agriculture, ecosystems & environment (15.06.2014)
Published in Agriculture, ecosystems & environment (15.06.2014)
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Journal Article
Age, gut location and diet impact the gut microbiome of a tropical herbivorous surgeonfish
Parata, Lara, Nielsen, Shaun, Xing, Xing, Thomas, Torsten, Egan, Suhelen, Vergés, Adriana
Published in FEMS microbiology ecology (01.01.2020)
Published in FEMS microbiology ecology (01.01.2020)
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Journal Article
A communal catalogue reveals Earth's multiscale microbial diversity
Thompson, Luke R, Sanders, Jon G, McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J, Prill, Robert J, Tripathi, Anupriya, Gibbons, Sean M, Ackermann, Gail, Navas-Molina, Jose A, Janssen, Stefan, Kopylova, Evguenia, Vázquez-Baeza, Yoshiki, González, Antonio, Morton, James T, Mirarab, Siavash, Zech Xu, Zhenjiang, Jiang, Lingjing, Haroon, Mohamed F, Kanbar, Jad, Zhu, Qiyun, Jin Song, Se, Kosciolek, Tomasz, Bokulich, Nicholas A, Lefler, Joshua, Brislawn, Colin J, Humphrey, Gregory, Owens, Sarah M, Hampton-Marcell, Jarrad, Berg-Lyons, Donna, McKenzie, Valerie, Fierer, Noah, Fuhrman, Jed A, Clauset, Aaron, Stevens, Rick L, Shade, Ashley, Pollard, Katherine S, Goodwin, Kelly D, Jansson, Janet K, Gilbert, Jack A, Knight, Rob
Published in Nature (London) (23.11.2017)
Published in Nature (London) (23.11.2017)
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Journal Article
Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis
Paramsothy, Sudarshan, Nielsen, Shaun, Kamm, Michael A., Deshpande, Nandan P., Faith, Jeremiah J., Clemente, Jose C., Paramsothy, Ramesh, Walsh, Alissa J., van den Bogaerde, Johan, Samuel, Douglas, Leong, Rupert W.L., Connor, Susan, Ng, Watson, Lin, Enmoore, Borody, Thomas J., Wilkins, Marc R., Colombel, Jean-Frederic, Mitchell, Hazel M., Kaakoush, Nadeem O.
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2019)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2019)
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Journal Article
Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis
Coffey, Michael J, Nielsen, Shaun, Wemheuer, Bernd, Kaakoush, Nadeem O, Garg, Millie, Needham, Bronwen, Pickford, Russell, Jaffe, Adam, Thomas, Torsten, Ooi, Chee Y
Published in Scientific reports (09.12.2019)
Published in Scientific reports (09.12.2019)
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Journal Article