by Spies, Noah, Nielsen, Cydney B., Padgett, Richard A., Burge, Christopher B.
Published in Molecular cell (23.10.2009)

by Nielsen, Cydney B
Published in Trends in genetics (01.02.2016)

by Nielsen, Cydney B, Cantor, Michael, Dubchak, Inna, Gordon, David, Wang, Ting
Published in Nature methods (01.03.2010)

by Eirew, Peter, Steif, Adi, Khattra, Jaswinder, Ha, Gavin, Yap, Damian, Farahani, Hossein, Gelmon, Karen, Chia, Stephen, Mar, Colin, Wan, Adrian, Laks, Emma, Biele, Justina, Shumansky, Karey, Rosner, Jamie, McPherson, Andrew, Nielsen, Cydney, Roth, Andrew J L, Lefebvre, Calvin, Bashashati, Ali, de Souza, Camila, Siu, Celia, Aniba, Radhouane, Brimhall, Jazmine, Oloumi, Arusha, Osako, Tomo, Bruna, Alejandra, Sandoval, Jose L, Algara, Teresa, Greenwood, Wendy, Leung, Kaston, Cheng, Hongwei, Xue, Hui, Wang, Yuzhuo, Lin, Dong, Mungall, Andrew J, Moore, Richard, Zhao, Yongjun, Lorette, Julie, Nguyen, Long, Huntsman, David, Eaves, Connie J, Hansen, Carl, Marra, Marco A, Caldas, Carlos, Shah, Sohrab P, Aparicio, Samuel
Published in Nature (London) (19.02.2015)

by Nielsen, Cydney B, Shomron, Noam, Sandberg, Rickard, Hornstein, Eran, Kitzman, Jacob, Burge, Christopher B
Published in RNA (Cambridge) (01.11.2007)

by Roth, Andrew, McPherson, Andrew, Laks, Emma, Biele, Justina, Yap, Damian, Wan, Adrian, Smith, Maia A, Nielsen, Cydney B, McAlpine, Jessica N, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P
Published in Nature methods (01.07.2016)

by Smith, Maia A, Nielsen, Cydney B, Chan, Fong Chun, McPherson, Andrew, Roth, Andrew, Farahani, Hossein, Machev, Daniel, Steif, Adi, Shah, Sohrab P
Published in Nature methods (30.05.2017)

by Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A, Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D, Johnson, Nathalie A, Sehn, Laurie H, Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M, Scott, David W, Steidl, Christian, Marra, Marco A, Gascoyne, Randy D, Shah, Sohrab P
Published in PLoS medicine (13.12.2016)

by MAUNAKEA, Alika K, NAGARAJAN, Raman P, TURECKI, Gustavo, DELANEY, Allen, VARHOL, Richard, THIESSEN, Nina, SHCHORS, Ksenya, HEINE, Vivi M, ROWITCH, David H, XIAOYUN XING, FIORE, Chris, SCHILLEBEECKX, Maximiliaan, BILENKY, Mikhail, JONES, Steven J. M, HAUSSLER, David, MARRA, Marco A, HIRST, Martin, TING WANG, COSTELLO, Joseph F, BALLINGER, Tracy J, D'SOUZA, Cletus, FOUSE, Shaun D, JOHNSON, Brett E, CHIBO HONG, NIELSEN, Cydney, YONGJUN ZHAO
Published in Nature (London) (08.07.2010)

by Sharp, Phillip A, Leung, Anthony K L, Young, Amanda G, Bhutkar, Arjun, Zheng, Grace X, Bosson, Andrew D, Nielsen, Cydney B
Published in Nature structural & molecular biology (01.02.2011)

by Zhou, Xin, Maricque, Brett, Xie, Mingchao, Li, Daofeng, Sundaram, Vasavi, Martin, Eric A, Koebbe, Brian C, Nielsen, Cydney, Hirst, Martin, Farnham, Peggy, Kuhn, Robert M, Zhu, Jingchun, Smirnov, Ivan, Kent, W James, Haussler, David, Madden, Pamela A F, Costello, Joseph F, Wang, Ting
Published in Nature methods (01.12.2011)

by Younesy, Hamid, Nielsen, Cydney B, Lorincz, Matthew C, Jones, Steven J M, Karimi, Mohammad M, Möller, Torsten
Published in Bioinformatics (Oxford, England) (01.11.2016)

by Birol, Inanç, Jackman, Shaun D., Nielsen, Cydney B., Qian, Jenny Q., Varhol, Richard, Stazyk, Greg, Morin, Ryan D., Zhao, Yongjun, Hirst, Martin, Schein, Jacqueline E., Horsman, Doug E., Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A., Jones, Steven J. M.
Published in Bioinformatics (01.11.2009)

by Ferstay, Joel A., Nielsen, Cydney B., Munzner, Tamara
Published in IEEE transactions on visualization and computer graphics (01.12.2013)

by O'Donoghue, Seán I, Gavin, Anne-Claude, Gehlenborg, Nils, Goodsell, David S, Hériché, Jean-Karim, Nielsen, Cydney B, North, Chris, Olson, Arthur J, Procter, James B, Shattuck, David W, Walter, Thomas, Wong, Bang
Published in Nature methods (01.03.2010)

by Nielsen, Cydney B, Friedman, Brad, Birren, Bruce, Burge, Christopher B, Galagan, James E
Published in PLoS biology (01.12.2004)

by McPherson, Andrew, Roth, Andrew, Laks, Emma, Masud, Tehmina, Bashashati, Ali, Zhang, Allen W, Ha, Gavin, Biele, Justina, Yap, Damian, Wan, Adrian, Prentice, Leah M, Khattra, Jaswinder, Smith, Maia A, Nielsen, Cydney B, Mullaly, Sarah C, Kalloger, Steve, Karnezis, Anthony, Shumansky, Karey, Siu, Celia, Rosner, Jamie, Chan, Hector Li, Ho, Julie, Melnyk, Nataliya, Senz, Janine, Yang, Winnie, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Bouchard-Côté, Alexandre, Gilks, C Blake, Huntsman, David G, McAlpine, Jessica N, Aparicio, Samuel, Shah, Sohrab P
Published in Nature genetics (01.07.2016)

by Nielsen, Cydney B, Younesy, Hamid, O'Geen, Henriette, Xu, Xiaoqin, Jackson, Andrew R, Milosavljevic, Aleksandar, Wang, Ting, Costello, Joseph F, Hirst, Martin, Farnham, Peggy J, Jones, Steven J M
Published in Genome research (01.11.2012)

by Nielsen, C.B., Jackman, S.D., Birol, I., Jones, S.J.M.
Published in IEEE transactions on visualization and computer graphics (01.11.2009)

by Leung, Anthony K.L, Young, Amanda G, Bhutkar, Arjun, Zheng, Grace X, Bosson, Andrew D, Nielsen, Cydney B, Sharp, Phillip A
Published in Nature structural & molecular biology (01.09.2011)