Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma
Saillard, Charlie, Delecourt, Flore, Schmauch, Benoit, Moindrot, Olivier, Svrcek, Magali, Bardier-Dupas, Armelle, Emile, Jean Francois, Ayadi, Mira, Rebours, Vinciane, de Mestier, Louis, Hammel, Pascal, Neuzillet, Cindy, Bachet, Jean Baptiste, Iovanna, Juan, Dusetti, Nelson, Blum, Yuna, Richard, Magali, Kermezli, Yasmina, Paradis, Valerie, Zaslavskiy, Mikhail, Courtiol, Pierre, Kamoun, Aurelie, Nicolle, Remy, Cros, Jerome
Published in Nature communications (13.06.2023)
Published in Nature communications (13.06.2023)
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Journal Article
Deregulation of Rab and Rab effector genes in bladder cancer
Ho, Joel R, Chapeaublanc, Elodie, Kirkwood, Lisa, Nicolle, Remy, Benhamou, Simone, Lebret, Thierry, Allory, Yves, Southgate, Jennifer, Radvanyi, François, Goud, Bruno
Published in PloS one (19.06.2012)
Published in PloS one (19.06.2012)
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Journal Article
Prognostic Biomarkers in Pancreatic Cancer: Avoiding Errata When Using the TCGA Dataset
Nicolle, Remy, Raffenne, Jerome, Paradis, Valerie, Couvelard, Anne, de Reynies, Aurelien, Blum, Yuna, Cros, Jerome
Published in Cancers (21.01.2019)
Published in Cancers (21.01.2019)
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Journal Article
An FGFR3/MYC positive feedback loop provides new opportunities for targeted therapies in bladder cancers
Mahe, Mélanie, Dufour, Florent, Neyret‐Kahn, Hélène, Moreno‐Vega, Aura, Beraud, Claire, Shi, Mingjun, Hamaidi, Imene, Sanchez‐Quiles, Virginia, Krucker, Clementine, Dorland‐Galliot, Marion, Chapeaublanc, Elodie, Nicolle, Remy, Lang, Hervé, Pouponnot, Celio, Massfelder, Thierry, Radvanyi, François, Bernard‐Pierrot, Isabelle
Published in EMBO molecular medicine (01.04.2018)
Published in EMBO molecular medicine (01.04.2018)
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Journal Article
Pancreatic Cancer Meets Human Microbiota: Close Encounters of the Third Kind
Arsenijevic, Tatjana, Nicolle, Remy, Bouchart, Christelle, D'Haene, Nicky, Demetter, Pieter, Puleo, Francesco, Van Laethem, Jean-Luc
Published in Cancers (11.03.2021)
Published in Cancers (11.03.2021)
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Journal Article
hENT1 Testing in Pancreatic Ductal Adenocarcinoma: Are We Ready? A Multimodal Evaluation of hENT1 Status
Raffenne, Jerome, Nicolle, Remy, Puleo, Francesco, Le Corre, Delphine, Boyez, Camille, Marechal, Raphael, Emile, Jean François, Demetter, Peter, Bardier, Armelle, Laurent-Puig, Pierre, de Mestier, Louis, Paradis, Valerie, Couvelard, Anne, VanLathem, Jean Luc, MacKey, John R, Bachet, Jean-Baptiste, Svrcek, Magali, Cros, Jerome
Published in Cancers (18.11.2019)
Published in Cancers (18.11.2019)
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Journal Article
Multi-omics data integration and modeling unravels new mechanisms for pancreatic cancer and improves prognostic prediction
Fraunhoffer, Nicolas A, Abuelafia, Analía Meilerman, Bigonnet, Martin, Gayet, Odile, Roques, Julie, Nicolle, Remy, Lomberk, Gwen, Urrutia, Raul, Dusetti, Nelson, Iovanna, Juan
Published in NPJ precision oncology (17.08.2022)
Published in NPJ precision oncology (17.08.2022)
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Journal Article
Basal-like and classical cells coexist in pancreatic cancer revealed by single-cell analysis on biopsy-derived pancreatic cancer organoids from the classical subtype
Juiz, Natalia, Elkaoutari, Abdessamad, Bigonnet, Martin, Gayet, Odile, Roques, Julie, Nicolle, Rémy, Iovanna, Juan, Dusetti, Nelson
Published in The FASEB journal (01.09.2020)
Published in The FASEB journal (01.09.2020)
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Journal Article
Stratification of Pancreatic Ductal Adenocarcinomas Based on Tumor and Microenvironment Features
Puleo, Francesco, Nicolle, Rémy, Blum, Yuna, Cros, Jérôme, Marisa, Laetitia, Demetter, Pieter, Quertinmont, Eric, Svrcek, Magali, Elarouci, Nabila, Iovanna, Juan, Franchimont, Denis, Verset, Laurine, Galdon, Maria Gomez, Devière, Jacques, de Reyniès, Aurélien, Laurent-Puig, Pierre, Van Laethem, Jean-Luc, Bachet, Jean-Baptiste, Maréchal, Raphaël
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2018)
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2018)
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Journal Article
Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes
Lomberk, Gwen, Blum, Yuna, Nicolle, Rémy, Nair, Asha, Gaonkar, Krutika Satish, Marisa, Laetitia, Mathison, Angela, Sun, Zhifu, Yan, Huihuang, Elarouci, Nabila, Armenoult, Lucile, Ayadi, Mira, Ordog, Tamas, Lee, Jeong-Heon, Oliver, Gavin, Klee, Eric, Moutardier, Vincent, Gayet, Odile, Bian, Benjamin, Duconseil, Pauline, Gilabert, Marine, Bigonnet, Martin, Garcia, Stephane, Turrini, Olivier, Delpero, Jean-Robert, Giovannini, Marc, Grandval, Philippe, Gasmi, Mohamed, Secq, Veronique, De Reyniès, Aurélien, Dusetti, Nelson, Iovanna, Juan, Urrutia, Raul
Published in Nature communications (17.05.2018)
Published in Nature communications (17.05.2018)
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Journal Article
Integrated molecular characterization of chondrosarcoma reveals critical determinants of disease progression
Nicolle, Rémy, Ayadi, Mira, Gomez-Brouchet, Anne, Armenoult, Lucile, Banneau, Guillaume, Elarouci, Nabila, Tallegas, Matthias, Decouvelaere, Anne-Valérie, Aubert, Sébastien, Rédini, Françoise, Marie, Béatrice, Labit-Bouvier, Corinne, Reina, Nicolas, Karanian, Marie, le Nail, Louis-Romée, Anract, Philippe, Gouin, François, Larousserie, Frédérique, de Reyniès, Aurélien, de Pinieux, Gonzague
Published in Nature communications (11.10.2019)
Published in Nature communications (11.10.2019)
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Journal Article
Role of the fatty pancreatic infiltration in pancreatic oncogenesis
Frendi, Sonia, Martineau, Chloé, Cazier, Hélène, Nicolle, Rémy, Chassac, Anaïs, Albuquerque, Miguel, Raffenne, Jérôme, Le Faouder, Julie, Paradis, Valérie, Cros, Jérôme, Couvelard, Anne, Rebours, Vinciane
Published in Scientific reports (19.03.2024)
Published in Scientific reports (19.03.2024)
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Journal Article
Therapeutic advances in metastatic pancreatic cancer: a focus on targeted therapies
Turpin, Anthony, Neuzillet, Cindy, Colle, Elise, Dusetti, Nelson, Nicolle, Rémy, Cros, Jérôme, de Mestier, Louis, Bachet, Jean-Baptiste, Hammel, Pascal
Published in Therapeutic Advances in Medical Oncology (2022)
Published in Therapeutic Advances in Medical Oncology (2022)
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Book Review
Journal Article
Precision medicine for KRAS wild-type pancreatic adenocarcinomas
Ben-Ammar, Imen, Rousseau, Adrien, Nicolle, Rémy, Tarabay, Anthony, Boige, Valérie, Valery, Marine, Pudlarz, Thomas, Malka, David, Gelli, Maximiliano, Fernandez-De-Sevilla, Elena, Fuerea, Alina, Tanguy, Marie-Laure, Rouleau, Etienne, Barbe, Rémy, Mathieu, Jacques R R, Jaulin, Fanny, Smolenschi, Cristina, Hollebecque, Antoine, Ducreux, Michel, Boileve, Alice
Published in European journal of cancer (1990) (01.01.2024)
Published in European journal of cancer (1990) (01.01.2024)
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Journal Article
Prediction of Adjuvant Gemcitabine Sensitivity in Resectable Pancreatic Adenocarcinoma Using the GemPred RNA Signature: An Ancillary Study of the PRODIGE-24/CCTG PA6 Clinical Trial
Nicolle, Rémy, Bachet, Jean-Baptiste, Harlé, Alexandre, Iovanna, Juan, Hammel, Pascal, Rebours, Vinciane, Turpin, Anthony, Ben Abdelghani, Meher, Wei, Alice, Mitry, Emmanuel, Lopez, Anthony, Biagi, James, François, Eric, Artru, Pascal, Lambert, Aurélien, Renouf, Daniel J, Monard, Laure, Mauduit, Marjorie, Dusetti, Nelson, Conroy, Thierry, Cros, Jérome
Published in Journal of clinical oncology (20.03.2024)
Published in Journal of clinical oncology (20.03.2024)
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Journal Article
Whole-Transcriptome Profiling on Small FFPE Samples: Which Sequencing Kit Should Be Used?
Hilmi, Marc, Armenoult, Lucile, Ayadi, Mira, Nicolle, Rémy
Published in Current issues in molecular biology (13.05.2022)
Published in Current issues in molecular biology (13.05.2022)
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Journal Article
Periostin‐ and podoplanin‐positive cancer‐associated fibroblast subtypes cooperate to shape the inflamed tumor microenvironment in aggressive pancreatic adenocarcinoma
Neuzillet, Cindy, Nicolle, Rémy, Raffenne, Jérôme, Tijeras‐Raballand, Annemilaï, Brunel, Alexia, Astorgues‐Xerri, Lucile, Vacher, Sophie, Arbateraz, Floriane, Fanjul, Marjorie, Hilmi, Marc, Samain, Rémi, Klein, Christophe, Perraud, Aurélie, Rebours, Vinciane, Mathonnet, Muriel, Bièche, Ivan, Kocher, Hemant, Cros, Jérôme, Bousquet, Corinne
Published in The Journal of pathology (01.12.2022)
Published in The Journal of pathology (01.12.2022)
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Journal Article
Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor–related Apoptosis-inducing Ligand in FGFR3-mutated Tumors
Groeneveld, Clarice S., Sanchez-Quiles, Virginia, Dufour, Florent, Shi, Mingjun, Dingli, Florent, Nicolle, Rémy, Chapeaublanc, Elodie, Poullet, Patrick, Jeffery, Daniel, Krucker, Clémentine, Maillé, Pascale, Vacherot, Francis, Vordos, Dimitri, Benhamou, Simone, Lebret, Thierry, Micheau, Olivier, Zinovyev, Andrei, Loew, Damarys, Allory, Yves, de Reyniès, Aurélien, Bernard-Pierrot, Isabelle, Radvanyi, François
Published in European urology (01.05.2024)
Published in European urology (01.05.2024)
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Journal Article