miRDeep: an integrated application tool for miRNA identification from RNA sequencing data
An, Jiyuan, Lai, John, Lehman, Melanie L, Nelson, Colleen C
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Gene expression based inference of cancer drug sensitivity
Chawla, Smriti, Rockstroh, Anja, Lehman, Melanie, Ratther, Ellca, Jain, Atishay, Anand, Anuneet, Gupta, Apoorva, Bhattacharya, Namrata, Poonia, Sarita, Rai, Priyadarshini, Das, Nirjhar, Majumdar, Angshul, Jayadeva, Ahuja, Gaurav, Hollier, Brett G., Nelson, Colleen C., Sengupta, Debarka
Published in Nature communications (27.09.2022)
Published in Nature communications (27.09.2022)
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miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data
An, Jiyuan, Lai, John, Sajjanhar, Atul, Lehman, Melanie L, Nelson, Colleen C
Published in BMC bioinformatics (12.08.2014)
Published in BMC bioinformatics (12.08.2014)
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Journal Article
Androgen levels increase by intratumoral de novo steroidogenesis during progression of castration-resistant prostate cancer
Locke, Jennifer A, Guns, Emma S, Lubik, Amy A, Adomat, Hans H, Hendy, Stephen C, Wood, Catherine A, Ettinger, Susan L, Gleave, Martin E, Nelson, Colleen C
Published in Cancer research (Chicago, Ill.) (01.08.2008)
Published in Cancer research (Chicago, Ill.) (01.08.2008)
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Journal Article
Apocryphal FADS2 activity promotes fatty acid diversification in cancer
Young, Reuben S.E., Bowman, Andrew P., Williams, Elizabeth D., Tousignant, Kaylyn D., Bidgood, Charles L., Narreddula, Venkateswara R., Gupta, Rajesh, Marshall, David L., Poad, Berwyck L.J., Nelson, Colleen C., Ellis, Shane R., Heeren, Ron M.A., Sadowski, Martin C., Blanksby, Stephen J.
Published in Cell reports (Cambridge) (09.02.2021)
Published in Cell reports (Cambridge) (09.02.2021)
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J-Circos: an interactive Circos plotter
An, Jiyuan, Lai, John, Sajjanhar, Atul, Batra, Jyotsna, Wang, Chenwei, Nelson, Colleen C
Published in Bioinformatics (01.05.2015)
Published in Bioinformatics (01.05.2015)
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Journal Article
Targeting Amino Acid Transport in Metastatic Castration-Resistant Prostate Cancer: Effects on Cell Cycle, Cell Growth, and Tumor Development
QIAN WANG, TIFFEN, Jessamy, BUCHANAN, Grant, NELSON, Colleen C, RASKO, John E. J, HOLST, Jeff, BAILEY, Charles G, LEHMAN, Melanie L, RITCHIE, William, FAZLI, Ladan, METIERRE, Cynthia, YUE FENG, LI, Estelle, GLEAVE, Martin
Published in JNCI : Journal of the National Cancer Institute (02.10.2013)
Published in JNCI : Journal of the National Cancer Institute (02.10.2013)
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Journal Article
Transcriptomic analysis of mRNA expression and alternative splicing during mouse sex determination
Zhao, Liang, Wang, Chenwei, Lehman, Melanie L., He, Mingyu, An, Jiyuan, Svingen, Terje, Spiller, Cassy M., Ng, Ee Ting, Nelson, Colleen C., Koopman, Peter
Published in Molecular and cellular endocrinology (15.12.2018)
Published in Molecular and cellular endocrinology (15.12.2018)
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Journal Article
Neuropilin-1 is over-expressed in claudin-low breast cancer and promotes tumor progression through acquisition of stem cell characteristics and RAS/MAPK pathway activation
Tang, Yu Hin, Rockstroh, Anja, Sokolowski, Kamil A, Lynam, Layla-Rose, Lehman, Melanie, Thompson, Erik W, Gregory, Philip A, Nelson, Colleen C, Volpert, Marianna, Hollier, Brett G
Published in Breast cancer research : BCR (25.01.2022)
Published in Breast cancer research : BCR (25.01.2022)
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Journal Article
Androgen Receptor and Nutrient Signaling Pathways Coordinate the Demand for Increased Amino Acid Transport during Prostate Cancer Progression
QIAN WANG, BAILEY, Charles G, RASKO, John E. J, HOLST, Jeff, NG, Cynthia, TIFFEN, Jessamy, THOENG, Annora, MINHAS, Vineet, LEHMAN, Melanie L, HENDY, Stephen C, BUCHANAN, Grant, NELSON, Colleen C
Published in Cancer research (Chicago, Ill.) (15.12.2011)
Published in Cancer research (Chicago, Ill.) (15.12.2011)
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Journal Article
Isomeric lipid signatures reveal compartmentalized fatty acid metabolism in cancer
Young, Reuben S.E., Bowman, Andrew P., Tousignant, Kaylyn D., Poad, Berwyck L.J., Gunter, Jennifer H., Philp, Lisa K., Nelson, Colleen C., Ellis, Shane R., Heeren, Ron M.A., Sadowski, Martin C., Blanksby, Stephen J.
Published in Journal of lipid research (01.06.2022)
Published in Journal of lipid research (01.06.2022)
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Journal Article
Intraprostatic androgens and androgen-regulated gene expression persist after testosterone suppression : Therapeutic implications for castration-resistant prostate cancer
MOSTAGHEL, Elahe A, PAGE, Stephanie T, BREMNER, William J, GLEAVE, Martin E, NELSON, Peter S, LIN, Daniel W, FAZLI, Ladan, COLEMAN, Iisa M, TRUE, Lawrence D, KNUDSEN, Beatrice, HESS, David L, NELSON, Colleen C, MATSUMOTO, Alvin M
Published in Cancer research (Chicago, Ill.) (15.05.2007)
Published in Cancer research (Chicago, Ill.) (15.05.2007)
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Journal Article
Phenotypic characterization of prostate cancer LNCaP cells cultured within a bioengineered microenvironment
Sieh, Shirly, Taubenberger, Anna V, Rizzi, Simone C, Sadowski, Martin, Lehman, Melanie L, Rockstroh, Anja, An, Jiyuan, Clements, Judith A, Nelson, Colleen C, Hutmacher, Dietmar W
Published in PloS one (05.09.2012)
Published in PloS one (05.09.2012)
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Journal Article
Whole-Genome Sequence of the Metastatic PC3 and LNCaP Human Prostate Cancer Cell Lines
Seim, Inge, Jeffery, Penny L, Thomas, Patrick B, Nelson, Colleen C, Chopin, Lisa K
Published in G3 : genes - genomes - genetics (01.06.2017)
Published in G3 : genes - genomes - genetics (01.06.2017)
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Journal Article
Paracrine interactions between LNCaP prostate cancer cells and bioengineered bone in 3D in vitro culture reflect molecular changes during bone metastasis
Sieh, Shirly, Taubenberger, Anna V, Lehman, Melanie L, Clements, Judith A, Nelson, Colleen C, Hutmacher, Dietmar W
Published in Bone (New York, N.Y.) (01.06.2014)
Published in Bone (New York, N.Y.) (01.06.2014)
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Journal Article
Modulation of paracrine signaling by CD9 positive small extracellular vesicles mediates cellular growth of androgen deprived prostate cancer
Soekmadji, Carolina, Riches, James D, Russell, Pamela J, Ruelcke, Jayde E, McPherson, Stephen, Wang, Chenwei, Hovens, Chris M, Corcoran, Niall M, Hill, Michelle M, Nelson, Colleen C
Published in Oncotarget (08.08.2017)
Published in Oncotarget (08.08.2017)
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Journal Article
Insulin Increases De Novo Steroidogenesis in Prostate Cancer Cells
LUBIK, Amy A, GUNTER, Jennifer H, HENDY, Stephen C, LOCKE, Jennifer A, ADOMAT, Hans H, THOMPSON, Vanessa, HERINGTON, Adrian, GLEAVE, Martin E, POLLAK, Michael, NELSON, Colleen C
Published in Cancer research (Chicago, Ill.) (01.09.2011)
Published in Cancer research (Chicago, Ill.) (01.09.2011)
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