High-definition spatial transcriptomics for in situ tissue profiling
Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L.
Published in Nature methods (01.10.2019)
Published in Nature methods (01.10.2019)
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Journal Article
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas
Published in Science (American Association for the Advancement of Science) (01.07.2016)
Published in Science (American Association for the Advancement of Science) (01.07.2016)
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Journal Article
Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease
Chen, Wei-Ting, Lu, Ashley, Craessaerts, Katleen, Pavie, Benjamin, Sala Frigerio, Carlo, Corthout, Nikky, Qian, Xiaoyan, Laláková, Jana, Kühnemund, Malte, Voytyuk, Iryna, Wolfs, Leen, Mancuso, Renzo, Salta, Evgenia, Balusu, Sriram, Snellinx, An, Munck, Sebastian, Jurek, Aleksandra, Fernandez Navarro, Jose, Saido, Takaomi C., Huitinga, Inge, Lundeberg, Joakim, Fiers, Mark, De Strooper, Bart
Published in Cell (20.08.2020)
Published in Cell (20.08.2020)
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Journal Article
Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections
Salmén, Fredrik, Ståhl, Patrik L., Mollbrink, Annelie, Navarro, José Fernández, Vickovic, Sanja, Frisén, Jonas, Lundeberg, Joakim
Published in Nature protocols (01.11.2018)
Published in Nature protocols (01.11.2018)
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Journal Article
Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
Andersson, Alma, Bergenstråhle, Joseph, Asp, Michaela, Bergenstråhle, Ludvig, Jurek, Aleksandra, Fernández Navarro, José, Lundeberg, Joakim
Published in Communications biology (09.10.2020)
Published in Communications biology (09.10.2020)
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Journal Article
Identification and transfer of spatial transcriptomics signatures for cancer diagnosis
Yoosuf, Niyaz, Navarro, José Fernández, Salmén, Fredrik, Ståhl, Patrik L, Daub, Carsten O
Published in Breast cancer research : BCR (13.01.2020)
Published in Breast cancer research : BCR (13.01.2020)
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Journal Article
Identification of early neurodegenerative pathways in progressive multiple sclerosis
Kaufmann, Max, Schaupp, Anna-Lena, Sun, Rosa, Coscia, Fabian, Dendrou, Calliope A., Cortes, Adrian, Kaur, Gurman, Evans, Hayley G., Mollbrink, Annelie, Navarro, José Fernández, Sonner, Jana K., Mayer, Christina, DeLuca, Gabriele C., Lundeberg, Joakim, Matthews, Paul M., Attfield, Kathrine E., Friese, Manuel A., Mann, Matthias, Fugger, Lars
Published in Nature neuroscience (01.07.2022)
Published in Nature neuroscience (01.07.2022)
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Journal Article
Spatial Transcriptomics Reveals Genes Associated with Dysregulated Mitochondrial Functions and Stress Signaling in Alzheimer Disease
Navarro, José Fernández, Croteau, Deborah L., Jurek, Aleksandra, Andrusivova, Zaneta, Yang, Beimeng, Wang, Yue, Ogedegbe, Benjamin, Riaz, Tahira, Støen, Mari, Desler, Claus, Rasmussen, Lene Juel, Tønjum, Tone, Galas, Marie-Christine, Lundeberg, Joakim, Bohr, Vilhelm A.
Published in iScience (23.10.2020)
Published in iScience (23.10.2020)
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Journal Article
Spatial detection of fetal marker genes expressed at low level in adult human heart tissue
Asp, Michaela, Salmén, Fredrik, Ståhl, Patrik L., Vickovic, Sanja, Felldin, Ulrika, Löfling, Marie, Fernandez Navarro, José, Maaskola, Jonas, Eriksson, Maria J., Persson, Bengt, Corbascio, Matthias, Persson, Hans, Linde, Cecilia, Lundeberg, Joakim
Published in Scientific reports (11.10.2017)
Published in Scientific reports (11.10.2017)
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Journal Article
Measurable Residual Disease and Fusion Partner Independently Predict Survival and Relapse Risk in Childhood KMT2A -Rearranged Acute Myeloid Leukemia: A Study by the International Berlin-Frankfurt-Münster Study Group
van Weelderen, Romy E, Klein, Kim, Harrison, Christine J, Jiang, Yilin, Abrahamsson, Jonas, Arad-Cohen, Nira, Bart-Delabesse, Emmanuelle, Buldini, Barbara, De Moerloose, Barbara, Dworzak, Michael N, Elitzur, Sarah, Fernández Navarro, José M, Gerbing, Robert B, Goemans, Bianca F, de Groot-Kruseman, Hester A, Guest, Erin, Ha, Shau-Yin, Hasle, Henrik, Kelaidi, Charikleia, Lapillonne, Hélène, Leverger, Guy, Locatelli, Franco, Masetti, Riccardo, Miyamura, Takako, Norén-Nyström, Ulrika, Polychronopoulou, Sophia, Rasche, Mareike, Rubnitz, Jeffrey E, Stary, Jan, Tierens, Anne, Tomizawa, Daisuke, Zwaan, C Michel, Kaspers, Gertjan J L
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Journal Article
Spatially resolved transcriptome profiling in model plant species
Giacomello, Stefania, Salmén, Fredrik, Terebieniec, Barbara K., Vickovic, Sanja, Navarro, José Fernandez, Alexeyenko, Andrey, Reimegård, Johan, McKee, Lauren S., Mannapperuma, Chanaka, Bulone, Vincent, Ståhl, Patrik L., Sundström, Jens F., Street, Nathaniel R., Lundeberg, Joakim
Published in Nature plants (2017)
Published in Nature plants (2017)
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Journal Article
Massive and parallel expression profiling using microarrayed single-cell sequencing
Vickovic, Sanja, Ståhl, Patrik L., Salmén, Fredrik, Giatrellis, Sarantis, Westholm, Jakub Orzechowski, Mollbrink, Annelie, Navarro, José Fernández, Custodio, Joaquin, Bienko, Magda, Sutton, Lesley-Ann, Rosenquist, Richard, Frisén, Jonas, Lundeberg, Joakim
Published in Nature communications (14.10.2016)
Published in Nature communications (14.10.2016)
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Journal Article
Enhancing Maize Stress Tolerance and Productivity through Synergistic Application of Bacillus velezensis A6 and Lamiales Plant Extract, Biostimulants Suitable for Organic Farming
Peñas-Corte, María, Bouzas, Paula R, Nieto Del Río, Juan, Manzanera, Maximino, Barros-Rodríguez, Adoración, Fernández-Navarro, José R
Published in Biology (Basel, Switzerland) (12.09.2024)
Published in Biology (Basel, Switzerland) (12.09.2024)
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Journal Article
An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries
Jemt, Anders, Salmén, Fredrik, Lundmark, Anna, Mollbrink, Annelie, Fernández Navarro, José, Ståhl, Patrik L., Yucel-Lindberg, Tülay, Lundeberg, Joakim
Published in Scientific reports (16.11.2016)
Published in Scientific reports (16.11.2016)
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Journal Article
Liquid chromatography tandem mass spectrometric determination of triterpenes in human fluids: Evaluation of markers of dietary intake of olive oil and metabolic disposition of oleanolic acid and maslinic acid in humans
Pozo, Oscar J., Pujadas, Mitona, Gleeson, Sarah Biel, Mesa-García, Maria Dolores, Pastor, Antoni, Kotronoulas, Aristotelis, Fitó, Montserrat, Covas, Maria-Isabel, Navarro, José Ramón Fernández, Espejo, Juan Antonio, Sanchez-Rodriguez, Estefania, Marchal, Rosa, Calleja, Miguel Angel, de la Torre, Rafael
Published in Analytica chimica acta (16.10.2017)
Published in Analytica chimica acta (16.10.2017)
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Journal Article
Evaluation of triple negative breast cancer with heterogeneous immune infiltration
Quintana, Ángela, Arenas, Enrique Javier, Bernadó, Cristina, Navarro, José Fernández, González, Jonatan, Esteve-Codina, Anna, Moliné, Teresa, Marti, Merce, Curigliano, Giuseppe, Schmid, Peter, Peg, Vicente, Arribas, Joaquín, Cortés, Javier
Published in Frontiers in immunology (04.05.2023)
Published in Frontiers in immunology (04.05.2023)
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Journal Article
Characterization of a Novel Thermostable Carboxylesterase from Geobacillus kaustophilus HTA426 Shows the Existence of a New Carboxylesterase Family
Montoro-García, Silvia, Martínez-Martínez, Irene, Navarro-Fernández, José, Takami, Hideto, García-Carmona, Francisco, Sánchez-Ferrer, Alvaro
Published in Journal of Bacteriology (01.05.2009)
Published in Journal of Bacteriology (01.05.2009)
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