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Identifying individuals with rare disease variants by inferring shared ancestral haplotypes from SNP array data
Robertson, Erandee, Grinton, Bronwyn E, Oliver, Karen L, Fearnley, Liam G, Hildebrand, Michael S, Sadleir, Lynette G, Scheffer, Ingrid E, Berkovic, Samuel F, Bennett, Mark F, Bahlo, Melanie
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila
Bertagna, Michael A, Bright, Lydia J, Ye, Fei, Jiang, Yu-Yang, Sarkar, Debolina, Pradhan, Ajay, Kumar, Santosh, Gao, Shan, Turkewitz, Aaron P, Tsypin, Lev M Z
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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TRanscriptome ANalysis of StratifiEd CohorTs (TRANSECT) enables automated assessment of global gene regulation linked to disparate expression in user defined genes and gene sets
Toubia, John, Kusay, Yasir, Maqsood, Muneeza, Warnock, Nicholas I, Lawrence, David M, Bracken, Cameron P, Gregory, Philip A, Kan, Winnie L, Selth, Luke A, Conn, Simon J, Lopez, Angel F, Branford, Susan, Scott, Hamish S, Kok, Chung Hoow, Goodall, Gregory J, Schreiber, Andreas W
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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CABO-16S—a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples
Eitel, Eryn M, Utter, Daniel R, Connon, Stephanie A, Orphan, Victoria J, Murali, Ranjani
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Novel treatment-specific causal biomarkers for colorectal cancer by omics integration
Yazdani, Akram, Yazdani, Azam, Mendez-Giraldez, Raul, Pillonetto, Gianluigi, Samiei, Esmat, Hadi, Reza, Lenz, Heinz-Josef, Venook, Alan P, Samiei, Ahmad, Nixon, Andrew B, Lucci, Joseph A, Kopetz, Scott, Bertagnolli, Monica M, Innocenti, Federico
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
Wang, Panwen, Yu, Yue, Dong, Haidong, Zhang, Shuwen, Sun, Zhifu, Zeng, Hu, Mondello, Patrizia, Kocher, Jean-Pierre A, Wang, Junwen, Asmann, Yan W, Lin, Yi, Li, Ying
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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MOLGENIS VIP: an end-to-end DNA variant interpretation pipeline for research and diagnostics configurable to support rapid implementation of new methods
Maassen, Willem T K, Johansson, Lennart F, Charbon, Bart, Hendriksen, Dennis, van den Hoek, Sander, Slofstra, Mariska K, Mulder, Renée, Meems-Veldhuis, Martine T, Sietsma, Robert, Lemmink, Henny H, van Diemen, Cleo C, van Gijn, Mariëlle E, Swertz, Morris A, van der Velde, Kasper J
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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TetRex: a novel algorithm for index-accelerated search of highly conserved motifs
Schwab, Remy M, Gottlieb, Simon Gene, Reinert, Knut
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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GINClus: RNA structural motif clustering using graph isomorphism network
Khan, Nabila Shahnaz, Rahaman, Md Mahfuzur, Zhang, Shaojie
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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mitoLEAF: mitochondrial DNA Lineage, Evolution, Annotation Framework
Huber, Nicole, Hurmer, Noah, Dür, Arne, Parson, Walther
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Experience in developing the human genome standard E701
Vasiliadis, Iuliia, Belova, Vera, Shmitko, Anna, Kuznetsova, Anna, Samitova, Alina, Suchalko, Oleg, Goltsov, Andrey, Shatalov, Peter, Shegai, Peter, Kulyabina, Elena, Kulyabina, Tatiana, Melkova, Olga, Rebrikov, Denis, Korostin, Dmitriy
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Comprehensive profiling of integrative conjugative elements (ICEs) in Mollicutes: distinct catalysts of gene flow and genome shaping
Chai, Zili, Guo, Zhiyun, Chen, Xinxin, Yang, Zilong, Wang, Xia, Zhang, Fengwei, Kang, Fuqiang, Liu, Wenting, Liang, Shuang, Ren, Hongguang, Yue, Junjie, Jin, Yuan
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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