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Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
Wang, Panwen, Yu, Yue, Dong, Haidong, Zhang, Shuwen, Sun, Zhifu, Zeng, Hu, Mondello, Patrizia, Kocher, Jean-Pierre A, Wang, Junwen, Asmann, Yan W, Lin, Yi, Li, Ying
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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hDNApipe: streamlining human genome analysis and interpretation with an intuitive and user-friendly interface
Zhang, Yaxin, Wu, Qiqin, Zhou, Ying, Cheng, Qingyu, Jin, Tengchuan
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila
Bertagna, Michael A, Bright, Lydia J, Ye, Fei, Jiang, Yu-Yang, Sarkar, Debolina, Pradhan, Ajay, Kumar, Santosh, Gao, Shan, Turkewitz, Aaron P, Tsypin, Lev M Z
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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TRanscriptome ANalysis of StratifiEd CohorTs (TRANSECT) enables automated assessment of global gene regulation linked to disparate expression in user defined genes and gene sets
Toubia, John, Kusay, Yasir, Maqsood, Muneeza, Warnock, Nicholas I, Lawrence, David M, Bracken, Cameron P, Gregory, Philip A, Kan, Winnie L, Selth, Luke A, Conn, Simon J, Lopez, Angel F, Branford, Susan, Scott, Hamish S, Kok, Chung Hoow, Goodall, Gregory J, Schreiber, Andreas W
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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The divergent intron-containing actin in sponge morphogenetic processes
Lyupina, Yulia V, Adameyko, Kim I, Zubarev, Vasiliy M, Cherkasov, Alexander V, Ryabova, Alina V, Mikhailov, Kirill V, Golyshev, Sergey A, Burakov, Anton V, Finoshin, Alexander D, Erokhov, Pavel A, Sabirov, Marat S, Zhurakovskaya, Anna I, Ziganshin, Rustam H, Gornostaev, Nikolai G, Ignatyuk, Vasilina M, Kulikov, Aleksei M, Mikhailov, Victor S, Gazizova, Guzel R, Shagimardanova, Elena I, Gusev, Oleg A, Khrameeva, Ekaterina E, Kravchuk, Oksana I
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Enhancing R-loop prediction with high-throughput sequencing data
Vanhaeren, Thomas, Cataneo, Ludovica, Divina, Federico, Martínez-García, Pedro Manuel
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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GINClus: RNA structural motif clustering using graph isomorphism network
Khan, Nabila Shahnaz, Rahaman, Md Mahfuzur, Zhang, Shaojie
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Integrating gene expression, genomic, and phosphoproteomic data to infer transcription factor activity in lung cancer
Carrino, Chiara, Pepe, Gerardo, Parca, Luca, Helmer-Citterich, Manuela, Gherardini, Pier Federico
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Novel treatment-specific causal biomarkers for colorectal cancer by omics integration
Yazdani, Akram, Yazdani, Azam, Mendez-Giraldez, Raul, Pillonetto, Gianluigi, Samiei, Esmat, Hadi, Reza, Lenz, Heinz-Josef, Venook, Alan P, Samiei, Ahmad, Nixon, Andrew B, Lucci, Joseph A, Kopetz, Scott, Bertagnolli, Monica M, Innocenti, Federico
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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Precise and scalable metagenomic profiling with sample-tailored minimizer libraries
Nyström-Persson, Johan, Bapatdhar, Nishad, Ghosh, Samik
Published in NAR genomics and bioinformatics (01.06.2025)
Published in NAR genomics and bioinformatics (01.06.2025)
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