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Generating realistic artificial human genomes using adversarial autoencoders
Burnard, Callum, Mancheron, Alban, Ritchie, William
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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Insight into the epigenetic regulation of gene expression in the bloodstream and procyclic forms of Trypanosoma brucei through the involvement of G-quadruplexes
Belmonte-Reche, Efres, Martínez-García, Marta, de Jong, Anne, Kuipers, Oscar P, Cebrián, Rubén
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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Advancing metagenomic classification with NABAS+: a novel alignment-based approach
Takács, Bertalan, Jaksa, Gábor, Qorri, Erda, Gyuris, Zoltán, Pintér, Lajos, Haracska, Lajos
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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Metagenomics-Toolkit: the flexible and efficient cloud-based metagenomics workflow featuring machine learning-enabled resource allocation
Belmann, Peter, Osterholz, Benedikt, Kleinbölting, Nils, Pühler, Alfred, Schlüter, Andreas, Sczyrba, Alexander
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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Cluefish: mining the dark matter of transcriptional data series with over-representation analysis enhanced by aggregated biological prior knowledge
Franklin, Ellis, Billoir, Elise, Veber, Philippe, Ohanessian, Jérémie, Delignette-Muller, Marie Laure, Prud’homme, Sophie Martine
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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An nf-core framework for the systematic comparison of alternative modeling tools: the multiple sequence alignment case study
Santus, Luisa, Espinosa-Carrasco, Jose, Rauschning, Leon, Mir-Pedrol, Júlia, Trujnara, Igor, Vignoli, Alessio, Mansouri, Leila, Baltzis, Athanasios, Floden, Evan W, Di Tommaso, Paolo, Garriga, Edgar, Gudyś, Adam, Deorowicz, Sebastian, Gilchrist, Cameron, Steinegger, Martin, Notredame, Cedric
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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Comparison of single-cell long-read and short-read transcriptome sequencing via cDNA molecule matching: quality evaluation of the MAS-ISO-seq approach
Zajac, Natalia, Zhang, Qin, Bratus-Neuenschwander, Anna, Qi, Weihong, Bolck, Hella Anna, Karakulak, Tülay, Oltra, Tamara Carrasco, Moch, Holger, Kahraman, Abdullah, Rehrauer, Hubert
Published in NAR genomics and bioinformatics (01.09.2025)
Published in NAR genomics and bioinformatics (01.09.2025)
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ST-deconv: an accurate deconvolution approach for spatial transcriptome data utilizing self-encoding and contrastive learning
Dai, Shurui, Li, Jiawei, Xia, Zhiliang, Ou, Jingfeng, Guo, Yan, Jiang, Limin, Tang, Jijun
Published in NAR genomics and bioinformatics (27.08.2025)
Published in NAR genomics and bioinformatics (27.08.2025)
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Consistent asymmetry in DNA damage artefacts across target regions in exome sequencing data
Medina, Tyler D, Bennett, Declan, Seoighe, Cathal
Published in NAR genomics and bioinformatics (27.08.2025)
Published in NAR genomics and bioinformatics (27.08.2025)
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EASYstrata: an all-in-one workflow for genome annotation and genomic divergence analysis
Rougemont, Quentin, Lucotte, Elise, Boyer, Loreleï, Jalaber de Dinechin, Alexandra, Snirc, Alodie, Giraud, Tatiana, Rodríguez de la Vega, Ricardo C
Published in NAR genomics and bioinformatics (27.08.2025)
Published in NAR genomics and bioinformatics (27.08.2025)
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Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening
Gezelius, Henrik, Enblad, Anna Pia, Lundmark, Anders, Åberg, Martin, Blom, Kristin, Rudfeldt, Jakob, Raine, Amanda, Harila, Arja, Rendo, Verónica, Heinäniemi, Merja, Andersson, Claes, Nordlund, Jessica
Published in NAR genomics and bioinformatics (01.03.2024)
Published in NAR genomics and bioinformatics (01.03.2024)
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mRNAid, an open-source platform for therapeutic mRNA design and optimization strategies
Vostrosablin, Nikita, Lim, Shuhui, Gopal, Pooja, Brazdilova, Kveta, Parajuli, Sushmita, Wei, Xiaona, Gromek, Anna, Prihoda, David, Spale, Martin, Muzdalo, Anja, Greig, Jamie, Yeo, Constance, Wardyn, Joanna, Mejzlik, Petr, Henry, Brian, Partridge, Anthony W, Bitton, Danny A
Published in NAR genomics and bioinformatics (01.03.2024)
Published in NAR genomics and bioinformatics (01.03.2024)
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A comparison on predicting functional impact of genomic variants
Wang, Dong, Li, Jie, Wang, Yadong, Wang, Edwin
Published in NAR genomics and bioinformatics (01.03.2022)
Published in NAR genomics and bioinformatics (01.03.2022)
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High-scale random access on DNA storage systems
El-Shaikh, Alex, Welzel, Marius, Heider, Dominik, Seeger, Bernhard
Published in NAR genomics and bioinformatics (01.03.2022)
Published in NAR genomics and bioinformatics (01.03.2022)
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