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Long-read structural and epigenetic profiling of a kidney tumor-matched sample with nanopore sequencing and optical genome mapping
Margalit, Sapir, Tulpová, Zuzana, Detinis Zur, Tahir, Michaeli, Yael, Deek, Jasline, Nifker, Gil, Haldar, Rita, Gnatek, Yehudit, Omer, Dorit, Dekel, Benjamin, Baris Feldman, Hagit, Grunwald, Assaf, Ebenstein, Yuval
Published in NAR genomics and bioinformatics (01.03.2025)
Published in NAR genomics and bioinformatics (01.03.2025)
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Polytect: an automatic clustering and labeling method for multicolor digital PCR data
Chen, Yao, De Spiegelaere, Ward, Trypsteen, Wim, Vandesompele, Jo, Wils, Gertjan, Gleerup, David, Lievens, Antoon, Thas, Olivier, Vynck, Matthijs
Published in NAR genomics and bioinformatics (01.03.2025)
Published in NAR genomics and bioinformatics (01.03.2025)
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SumoPred-PLM: human SUMOylation and SUMO2/3 sites Prediction using Pre-trained Protein Language Model
Palacios, Andrew Vargas, Acharya, Pujan, Peidl, Anthony Stephen, Beck, Moriah Rene, Blanco, Eduardo, Mishra, Avdesh, Bawa-Khalfe, Tasneem, Pakhrin, Subash Chandra
Published in NAR genomics and bioinformatics (01.03.2024)
Published in NAR genomics and bioinformatics (01.03.2024)
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Decoding functional proteome information in model organisms using protein language models
Barrios-Núñez, Israel, Martínez-Redondo, Gemma I, Medina-Burgos, Patricia, Cases, Ildefonso, Fernández, Rosa, Rojas, Ana M
Published in NAR genomics and bioinformatics (01.09.2024)
Published in NAR genomics and bioinformatics (01.09.2024)
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Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings
LeRoy, Nathan J, Smith, Jason P, Zheng, Guangtao, Rymuza, Julia, Gharavi, Erfaneh, Brown, Donald E, Zhang, Aidong, Sheffield, Nathan C
Published in NAR genomics and bioinformatics (01.09.2024)
Published in NAR genomics and bioinformatics (01.09.2024)
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GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations
Degalez, Fabien, Bardou, Philippe, Lagarrigue, Sandrine
Published in NAR genomics and bioinformatics (01.09.2024)
Published in NAR genomics and bioinformatics (01.09.2024)
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Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases
Gyawali, Nikesh, Hao, Yangfan, Lin, Guifang, Huang, Jun, Bika, Ravi, Daza, Lidia Calderon, Zheng, Huakun, Cruppe, Giovana, Caragea, Doina, Cook, David, Valent, Barbara, Liu, Sanzhen
Published in NAR genomics and bioinformatics (01.09.2024)
Published in NAR genomics and bioinformatics (01.09.2024)
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Cell type deconvolution of methylated cell-free DNA at the resolution of individual reads
Keukeleire, Pia, Makrodimitris, Stavros, Reinders, Marcel
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Quasi-prime peptides: identification of the shortest peptide sequences unique to a species
Mouratidis, Ioannis, Chan, Candace S Y, Chantzi, Nikol, Tsiatsianis, Georgios Christos, Hemberg, Martin, Ahituv, Nadav, Georgakopoulos-Soares, Ilias
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration
Kokoli, Maria, Karatzas, Evangelos, Baltoumas, Fotis A, Schneider, Reinhard, Pafilis, Evangelos, Paragkamian, Savvas, Doncheva, Nadezhda T, Jensen, Lars Juhl, Pavlopoulos, Georgios A
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Alternative splicing analysis benchmark with DICAST
Fenn, Amit, Tsoy, Olga, Faro, Tim, Rößler, Fanny L M, Dietrich, Alexander, Kersting, Johannes, Louadi, Zakaria, Lio, Chit Tong, Völker, Uwe, Baumbach, Jan, Kacprowski, Tim, List, Markus
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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