Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry
Nøjgaard, Nikolai, Fontana, Walter, Hellmuth, Marc, Merkle, Daniel
Published in Journal of computational biology (01.07.2021)
Published in Journal of computational biology (01.07.2021)
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Journal Article
Graph transformation for enzymatic mechanisms
Andersen, Jakob L, Fagerberg, Rolf, Flamm, Christoph, Fontana, Walter, Kolčák, Juraj, Laurent, Christophe V F P, Merkle, Daniel, Nøjgaard, Nikolai
Published in Bioinformatics (12.07.2021)
Published in Bioinformatics (12.07.2021)
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Journal Article
Representing Catalytic Mechanisms with Rule Composition
Andersen, Jakob L., Fagerberg, Rolf, Flamm, Christoph, Fontana, Walter, Kolčák, Juri, Laurent, Christophe V.F.P., Merkle, Daniel, Nøjgaard, Nikolai
Published in Journal of chemical information and modeling (28.11.2022)
Published in Journal of chemical information and modeling (28.11.2022)
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Journal Article
Time-consistent reconciliation maps and forbidden time travel
Nøjgaard, Nikolai, Geiß, Manuela, Merkle, Daniel, Stadler, Peter F, Wieseke, Nicolas, Hellmuth, Marc
Published in Algorithms for molecular biology (06.02.2018)
Published in Algorithms for molecular biology (06.02.2018)
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Journal Article
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Hellmuth, Marc, Michel, Mira, Nøjgaard, Nikolai N., Schaller, David, Stadler, Peter F.
Published in Advances in Bioinformatics and Computational Biology (2021)
Published in Advances in Bioinformatics and Computational Biology (2021)
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Book Chapter
Conference Proceeding
Generic Context-Aware Group Contributions
Flamm, Christoph, Hellmuth, Marc, Merkle, Daniel, Nojgaard, Nikolai, Stadler, Peter F.
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.01.2022)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.01.2022)
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Journal Article
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry
Nøjgaard, Nikolai, Fontana, Walter, Hellmuth, Marc, Merkle, Daniel
Published in arXiv.org (09.08.2021)
Published in arXiv.org (09.08.2021)
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Paper
Journal Article
Automated Inference of Graph Transformation Rules
Andersen, Jakob L, Davoodi, Akbar, Fagerberg, Rolf, Flamm, Christoph, Fontana, Walter, Kolčák, Juri, Laurent, Christophe V. F. P, Merkle, Daniel, Nøjgaard, Nikolai
Year of Publication 03.04.2024
Year of Publication 03.04.2024
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Journal Article
Efficient Modular Graph Transformation Rule Application
Andersen, Jakob L, Fagerberg, Rolf, Kolčák, Juri, Laurent, Christophe V. F. P, Merkle, Daniel, Nøjgaard, Nikolai
Year of Publication 12.01.2022
Year of Publication 12.01.2022
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Journal Article
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Hellmuth, Marc, Michel, Mira, Nøjgaard, Nikolai N, Schaller, David, Stadler, Peter F
Year of Publication 05.07.2021
Year of Publication 05.07.2021
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Journal Article
Representing catalytic mechanisms with rule composition
Andersen, Jakob L, Fagerberg, Rolf, Flamm, Christoph, Fontana, Walter, Kolčák, Juri, Laurent, Christophe V. F. P, Merkle, Daniel, Nøjgaard, Nikolai
Year of Publication 12.01.2022
Year of Publication 12.01.2022
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Journal Article
A Graph-Based Tool to Embed the {\pi}-Calculus into a Computational DPO Framework
Andersen, Jakob Lykke, Hellmuth, Marc, Merkle, Daniel, Nøjgaard, Nikolai, Peressotti, Marco
Year of Publication 29.10.2019
Year of Publication 29.10.2019
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Journal Article
Efficient Modular Graph Transformation Rule Application
Andersen, Jakob L, Fagerberg, Rolf, Kolčák, Juri, Christophe V F P Laurent, Merkle, Daniel, Nøjgaard, Nikolai
Published in arXiv.org (25.08.2022)
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Published in arXiv.org (25.08.2022)
Paper
Partial Homology Relations - Satisfiability in terms of Di-Cographs
Nøjgaard, Nikolai, El-Mabrouk, Nadia, Merkle, Daniel, Wieseke, Nikolas, Hellmuth, Marc
Year of Publication 01.11.2017
Year of Publication 01.11.2017
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Journal Article
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Hellmuth, Marc, Michel, Mira, Nøjgaard, Nikolai N, Schaller, David, Stadler, Peter F
Published in arXiv.org (05.07.2021)
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Published in arXiv.org (05.07.2021)
Paper
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps
Nøjgaard, Nikolai, Geiß, Manuela, Stadler, Peter F, Merkle, Daniel, Wieseke, Nicolas, Hellmuth, Marc
Year of Publication 05.05.2017
Year of Publication 05.05.2017
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Journal Article