Classical mathematical models for prediction of response to chemotherapy and immunotherapy
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Published in PLoS computational biology (04.02.2022)
Published in PLoS computational biology (04.02.2022)
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Regression-based Deep-Learning predicts molecular biomarkers from pathology slides
El Nahhas, Omar S M, Loeffler, Chiara M L, Carrero, Zunamys I, van Treeck, Marko, Kolbinger, Fiona R, Hewitt, Katherine J, Muti, Hannah S, Graziani, Mara, Zeng, Qinghe, Calderaro, Julien, Ortiz-Brüchle, Nadina, Yuan, Tanwei, Hoffmeister, Michael, Brenner, Hermann, Brobeil, Alexander, Reis-Filho, Jorge S, Kather, Jakob Nikolas
Published in Nature communications (10.02.2024)
Published in Nature communications (10.02.2024)
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Author Correction: Regression-based Deep-Learning predicts molecular biomarkers from pathology slides
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Published in Nature communications (29.02.2024)
Published in Nature communications (29.02.2024)
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Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology: a retrospective multicentric study
Muti, Hannah S., Röcken, Christoph, Behrens, Hans-Michael, Löffler, Chiara M.L., Reitsam, Nic G., Grosser, Bianca, Märkl, Bruno, Stange, Daniel E., Jiang, Xiaofeng, Veldhuizen, Gregory P., Truhn, Daniel, Ebert, Matthias P., Grabsch, Heike I., Kather, Jakob N.
Published in European journal of cancer (1990) (01.11.2023)
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Novel biomarker SARIFA in colorectal cancer: highly prognostic, not genetically driven and histologic indicator of a distinct tumor biology
Reitsam, Nic G, Grozdanov, Veselin, Löffler, Chiara M L, Muti, Hannah S, Grosser, Bianca, Kather, Jakob N, Märkl, Bruno
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Characterisation of tumour-immune phenotypes and PD-L1 positivity in squamous bladder cancer
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Published in BMC cancer (01.02.2023)
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Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning
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Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.03.2023)
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.03.2023)
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Converging deep learning and human-observed tumor-adipocyte interaction as a biomarker in colorectal cancer
Reitsam, Nic G, Grosser, Bianca, Steiner, David F, Grozdanov, Veselin, Wulczyn, Ellery, L’Imperio, Vincenzo, Plass, Markus, Müller, Heimo, Zatloukal, Kurt, Muti, Hannah S, Kather, Jakob N, Märkl, Bruno
Published in Communications medicine (15.08.2024)
Published in Communications medicine (15.08.2024)
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Pan-cancer image-based detection of clinically actionable genetic alterations
Kather, Jakob Nikolas, Heij, Lara R, Grabsch, Heike I, Loeffler, Chiara, Echle, Amelie, Muti, Hannah Sophie, Krause, Jeremias, Niehues, Jan M, Sommer, Kai A J, Bankhead, Peter, Kooreman, Loes F S, Schulte, Jefree J, Cipriani, Nicole A, Buelow, Roman D, Boor, Peter, Ortiz-Brüchle, Nadi-Na, Hanby, Andrew M, Speirs, Valerie, Kochanny, Sara, Patnaik, Akash, Srisuwananukorn, Andrew, Brenner, Hermann, Hoffmeister, Michael, van den Brandt, Piet A, Jäger, Dirk, Trautwein, Christian, Pearson, Alexander T, Luedde, Tom
Published in Nature cancer (01.08.2020)
Published in Nature cancer (01.08.2020)
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The future landscape of large language models in medicine
Clusmann, Jan, Kolbinger, Fiona R, Muti, Hannah Sophie, Carrero, Zunamys I, Eckardt, Jan-Niklas, Laleh, Narmin Ghaffari, Löffler, Chiara Maria Lavinia, Schwarzkopf, Sophie-Caroline, Unger, Michaela, Veldhuizen, Gregory P, Wagner, Sophia J, Kather, Jakob Nikolas
Published in Communications medicine (10.10.2023)
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Development and validation of deep learning classifiers to detect Epstein-Barr virus and microsatellite instability status in gastric cancer: a retrospective multicentre cohort study
Muti, Hannah Sophie, Heij, Lara Rosaline, Keller, Gisela, Kohlruss, Meike, Langer, Rupert, Dislich, Bastian, Cheong, Jae-Ho, Kim, Young-Woo, Kim, Hyunki, Kook, Myeong-Cherl, Cunningham, David, Allum, William H, Langley, Ruth E, Nankivell, Matthew G, Quirke, Philip, Hayden, Jeremy D, West, Nicholas P, Irvine, Andrew J, Yoshikawa, Takaki, Oshima, Takashi, Huss, Ralf, Grosser, Bianca, Roviello, Franco, d'Ignazio, Alessia, Quaas, Alexander, Alakus, Hakan, Tan, Xiuxiang, Pearson, Alexander T, Luedde, Tom, Ebert, Matthias P, Jäger, Dirk, Trautwein, Christian, Gaisa, Nadine Therese, Grabsch, Heike I, Kather, Jakob Nikolas
Published in The Lancet. Digital health (01.10.2021)
Published in The Lancet. Digital health (01.10.2021)
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Predicting Mutational Status of Driver and Suppressor Genes Directly from Histopathology With Deep Learning: A Systematic Study Across 23 Solid Tumor Types
Loeffler, Chiara Maria Lavinia, Gaisa, Nadine T, Muti, Hannah Sophie, van Treeck, Marko, Echle, Amelie, Ghaffari Laleh, Narmin, Trautwein, Christian, Heij, Lara R, Grabsch, Heike I, Ortiz Bruechle, Nadina, Kather, Jakob Nikolas
Published in Frontiers in genetics (16.02.2022)
Published in Frontiers in genetics (16.02.2022)
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Deep learning-based subtyping of gastric cancer histology predicts clinical outcome: a multi-institutional retrospective study
Veldhuizen, Gregory Patrick, Röcken, Christoph, Behrens, Hans-Michael, Cifci, Didem, Muti, Hannah Sophie, Yoshikawa, Takaki, Arai, Tomio, Oshima, Takashi, Tan, Patrick, Ebert, Matthias P., Pearson, Alexander T., Calderaro, Julien, Grabsch, Heike I., Kather, Jakob Nikolas
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.09.2023)
Published in Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association (01.09.2023)
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Swarm learning for decentralized artificial intelligence in cancer histopathology
Saldanha, Oliver Lester, Quirke, Philip, West, Nicholas P, James, Jacqueline A, Loughrey, Maurice B, Grabsch, Heike I, Salto-Tellez, Manuel, Alwers, Elizabeth, Cifci, Didem, Ghaffari Laleh, Narmin, Seibel, Tobias, Gray, Richard, Hutchins, Gordon G A, Brenner, Hermann, van Treeck, Marko, Yuan, Tanwei, Brinker, Titus J, Chang-Claude, Jenny, Khader, Firas, Schuppert, Andreas, Luedde, Tom, Trautwein, Christian, Muti, Hannah Sophie, Foersch, Sebastian, Hoffmeister, Michael, Truhn, Daniel, Kather, Jakob Nikolas
Published in Nature medicine (01.06.2022)
Published in Nature medicine (01.06.2022)
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Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology
Ghaffari Laleh, Narmin, Muti, Hannah Sophie, Loeffler, Chiara Maria Lavinia, Echle, Amelie, Saldanha, Oliver Lester, Mahmood, Faisal, Lu, Ming Y., Trautwein, Christian, Langer, Rupert, Dislich, Bastian, Buelow, Roman D., Grabsch, Heike Irmgard, Brenner, Hermann, Chang-Claude, Jenny, Alwers, Elizabeth, Brinker, Titus J., Khader, Firas, Truhn, Daniel, Gaisa, Nadine T., Boor, Peter, Hoffmeister, Michael, Schulz, Volkmar, Kather, Jakob Nikolas
Published in Medical image analysis (01.07.2022)
Published in Medical image analysis (01.07.2022)
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Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance
Niehues, Jan M., Müller-Franzes, Gustav, Schirris, Yoni, Wagner, Sophia Janine, Jendrusch, Michael, Kloor, Matthias, Pearson, Alexander T., Muti, Hannah Sophie, Hewitt, Katherine J., Veldhuizen, Gregory P., Zigutyte, Laura, Truhn, Daniel, Kather, Jakob Nikolas
Published in Computers in biology and medicine (01.06.2024)
Published in Computers in biology and medicine (01.06.2024)
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End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study
Jiang, Xiaofeng, Hoffmeister, Michael, Brenner, Hermann, Muti, Hannah Sophie, Yuan, Tanwei, Foersch, Sebastian, West, Nicholas P, Brobeil, Alexander, Jonnagaddala, Jitendra, Hawkins, Nicholas, Ward, Robyn L, Brinker, Titus J, Saldanha, Oliver Lester, Ke, Jia, Müller, Wolfram, Grabsch, Heike I, Quirke, Philip, Truhn, Daniel, Kather, Jakob Nikolas
Published in The Lancet. Digital health (01.01.2024)
Published in The Lancet. Digital health (01.01.2024)
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Direct image to subtype prediction for brain tumors using deep learning
Hewitt, Katherine J, Löffler, Chiara M L, Muti, Hannah Sophie, Berghoff, Anna Sophie, Eisenlöffel, Christian, van Treeck, Marko, Carrero, Zunamys I, El Nahhas, Omar S M, Veldhuizen, Gregory P, Weil, Sophie, Saldanha, Oliver Lester, Bejan, Laura, Millner, Thomas O, Brandner, Sebastian, Brückmann, Sascha, Kather, Jakob Nikolas
Published in Neuro-oncology advances (01.01.2023)
Published in Neuro-oncology advances (01.01.2023)
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Author Correction: Pan-cancer image-based detection of clinically actionable genetic alterations
Kather, Jakob Nikolas, Heij, Lara R, Grabsch, Heike I, Loeffler, Chiara, Echle, Amelie, Muti, Hannah Sophie, Krause, Jeremias, Niehues, Jan M, Sommer, Kai A J, Bankhead, Peter, Kooreman, Loes F S, Schulte, Jefree J, Cipriani, Nicole A, Buelow, Roman D, Boor, Peter, Ortiz-Brüchle, Nadina, Hanby, Andrew M, Speirs, Valerie, Kochanny, Sara, Patnaik, Akash, Srisuwananukorn, Andrew, Brenner, Hermann, Hoffmeister, Michael, van den Brandt, Piet A, Jäger, Dirk, Trautwein, Christian, Pearson, Alexander T, Luedde, Tom
Published in Nature cancer (01.11.2020)
Published in Nature cancer (01.11.2020)
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Benchmarking foundation models as feature extractors for weakly-supervised computational pathology
Neidlinger, Peter, Nahhas, Omar S. M. El, Muti, Hannah Sophie, Lenz, Tim, Hoffmeister, Michael, Brenner, Hermann, van Treeck, Marko, Langer, Rupert, Dislich, Bastian, Behrens, Hans Michael, Röcken, Christoph, Foersch, Sebastian, Truhn, Daniel, Marra, Antonio, Saldanha, Oliver Lester, Kather, Jakob Nikolas
Year of Publication 28.08.2024
Year of Publication 28.08.2024
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