Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
Allard, Marc W, Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M, Brown, Eric W, Timme, Ruth
Published in Journal of clinical microbiology (01.08.2016)
Published in Journal of clinical microbiology (01.08.2016)
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Journal Article
Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water
Maguire, Meghan, Kase, Julie A, Roberson, Dwayne, Muruvanda, Tim, Brown, Eric W, Allard, Marc, Musser, Steven M, González-Escalona, Narjol
Published in PloS one (14.01.2021)
Published in PloS one (14.01.2021)
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Journal Article
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004
Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Timme, Ruth, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W
Published in PloS one (30.01.2013)
Published in PloS one (30.01.2013)
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Journal Article
High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach
Allard, Marc W, Luo, Yan, Strain, Errol, Li, Cong, Keys, Christine E, Son, Insook, Stones, Robert, Musser, Steven M, Brown, Eric W
Published in BMC genomics (19.01.2012)
Published in BMC genomics (19.01.2012)
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Journal Article
Development of a targeted amplicon sequencing method for genotyping Cyclospora cayetanensis from fresh produce and clinical samples with enhanced genomic resolution and sensitivity
Leonard, Susan R, Mammel, Mark K, Gharizadeh, Baback, Almeria, Sonia, Ma, Zhihai, Lipman, David J, Torrence, Mary E, Wang, Chunlin, Musser, Steven M
Published in Frontiers in microbiology (16.06.2023)
Published in Frontiers in microbiology (16.06.2023)
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Journal Article
Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water
Maguire, Meghan, Ramachandran, Padmini, Tallent, Sandra, Mammel, Mark K., Brown, Eric W., Allard, Marc W., Musser, Steven M., González-Escalona, Narjol
Published in Frontiers in microbiology (31.08.2023)
Published in Frontiers in microbiology (31.08.2023)
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Journal Article
Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters
Timme, Ruth E, Pettengill, James B, Allard, Marc W, Strain, Errol, Barrangou, Rodolphe, Wehnes, Chris, Van Kessel, Joann S, Karns, Jeffrey S, Musser, Steven M, Brown, Eric W
Published in Genome biology and evolution (01.01.2013)
Published in Genome biology and evolution (01.01.2013)
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Journal Article
Evaluation of the Increased Genetic Resolution and Utility for Source Tracking of a Recently Developed Method for Genotyping Cyclospora cayetanensis
Leonard, Susan R, Mammel, Mark K, Almeria, Sonia, Gebru, Solomon T, Jacobson, David K, Peterson, Anna C, Barratt, Joel L N, Musser, Steven M
Published in Microorganisms (Basel) (24.04.2024)
Published in Microorganisms (Basel) (24.04.2024)
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Journal Article
Metagenomic survey of agricultural water using long read sequencing: Considerations for a successful analysis
Maguire, Meghan, Kase, Julie A., Brown, Eric W., Allard, Marc W., Musser, Steven M., González-Escalona, Narjol
Published in Frontiers in environmental science (10.08.2022)
Published in Frontiers in environmental science (10.08.2022)
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Journal Article
Analysis of Coffee for the Presence of Acrylamide by LC-MS/MS
Andrzejewski, Denis, Roach, John A. G, Gay, Martha L, Musser, Steven M
Published in Journal of agricultural and food chemistry (07.04.2004)
Published in Journal of agricultural and food chemistry (07.04.2004)
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Journal Article
Draft Genome Sequences of 21 Salmonella enterica Serovar Enteritidis Strains
Timme, Ruth E, Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W
Published in Journal of Bacteriology (01.11.2012)
Published in Journal of Bacteriology (01.11.2012)
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Journal Article
Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells
Williams, Tracie L, Andrzejewski, Denis, Lay, Jackson O, Musser, Steven M
Published in Journal of the American Society for Mass Spectrometry (01.04.2003)
Published in Journal of the American Society for Mass Spectrometry (01.04.2003)
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Journal Article
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica
Pettengill, James B, Timme, Ruth E, Barrangou, Rodolphe, Toro, Magaly, Allard, Marc W, Strain, Errol, Musser, Steven M, Brown, Eric W
Published in PeerJ (San Francisco, CA) (17.04.2014)
Published in PeerJ (San Francisco, CA) (17.04.2014)
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Journal Article
Genomic perspectives on foodborne illness
Lipman, David J., Cherry, Joshua L., Strain, Errol, Agarwala, Richa, Musser, Steven M.
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (12.11.2024)
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Journal Article
Detection, Confirmation, and Quantification of Staphylococcal Enterotoxin B in Food Matrixes Using Liquid Chromatography−Mass Spectrometry
Callahan, John H, Shefcheck, Kevin J, Williams, Tracie L, Musser, Steven M
Published in Analytical chemistry (Washington) (15.03.2006)
Published in Analytical chemistry (Washington) (15.03.2006)
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Journal Article
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States
Stevens, Eric L, Carleton, Heather A, Beal, Jennifer, Tillman, Glenn E, Lindsey, Rebecca L, Lauer, A C, Pightling, Arthur, Jarvis, Karen G, Ottesen, Andrea, Ramachandran, Padmini, Hintz, Leslie, Katz, Lee S, Folster, Jason P, Whichard, Jean M, Trees, Eija, Timme, Ruth E, McDERMOTT, Patrick, Wolpert, Beverly, Bazaco, Michael, Zhao, Shaohua, Lindley, Sabina, Bruce, Beau B, Griffin, Patricia M, Brown, Eric, Allard, Marc, Tallent, Sandra, Irvin, Kari, Hoffmann, Maria, Wise, Matt, Tauxe, Robert, Gerner-Smidt, Peter, Simmons, Mustafa, Kissler, Bonnie, Defibaugh-Chavez, Stephanie, Klimke, William, Agarwala, Richa, Lindsay, James, Cook, Kimberly, Austerman, Suelee Robbe, Goldman, David, McGARRY, Sherri, Hale, Kis Robertson, Dessai, Uday, Musser, Steven M, Braden, Chris
Published in Journal of food protection (01.05.2022)
Published in Journal of food protection (01.05.2022)
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Journal Article
Relative Toxicities of DNA Cross-Links and Monoadducts: New Insights from Studies of Decarbamoyl Mitomycin C and Mitomycin C
Palom, Yolanda, Suresh Kumar, Gopinatha, Tang, Li-Qian, Paz, Manuel M, Musser, Steven M, Rockwell, Sara, Tomasz, Maria
Published in Chemical research in toxicology (01.11.2002)
Published in Chemical research in toxicology (01.11.2002)
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Journal Article
Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing
Lienau, E. Kurt, Cao, Guojie, Stones, Robert, Strain, Errol, Meng, Jianghong, Wang, Charles, Zheng, Jie, Ottesen, Andrea R, Keys, Christine E, Hammack, Thomas S, Musser, Steven M, Brown, Eric W, Allard, Marc W
Published in The New England journal of medicine (10.03.2011)
Published in The New England journal of medicine (10.03.2011)
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Journal Article
Survey of Foodborne Pathogens, Aerobic Plate Counts, Total Coliform Counts, and Escherichia coli Counts in Leafy Greens, Sprouts, and Melons Marketed in the United States
Zhang, Guodong, Chen, Yi, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W, Strain, Errol, Allard, Marc, Bunning, Vincent K, Parish, Mickey, Musser, Steven M, Hammack, Thomas S
Published in Journal of food protection (01.03.2018)
Published in Journal of food protection (01.03.2018)
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Journal Article