A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity
Nelson, Louisa, Tighe, Anthony, Golder, Anya, Littler, Samantha, Bakker, Bjorn, Moralli, Daniela, Murtuza Baker, Syed, Donaldson, Ian J., Spierings, Diana C. J., Wardenaar, René, Neale, Bethanie, Burghel, George J., Winter-Roach, Brett, Edmondson, Richard, Clamp, Andrew R., Jayson, Gordon C., Desai, Sudha, Green, Catherine M., Hayes, Andy, Foijer, Floris, Morgan, Robert D., Taylor, Stephen S.
Published in Nature communications (13.02.2020)
Published in Nature communications (13.02.2020)
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Journal Article
ZIC3 Controls the Transition from Naive to Primed Pluripotency
Yang, Shen-Hsi, Andrabi, Munazah, Biss, Rebecca, Murtuza Baker, Syed, Iqbal, Mudassar, Sharrocks, Andrew D
Published in Cell reports (Cambridge) (11.06.2019)
Published in Cell reports (Cambridge) (11.06.2019)
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Journal Article
An improved constraint filtering technique for inferring hidden states and parameters of a biological model
Murtuza Baker, Syed, Poskar, C Hart, Schreiber, Falk, Junker, Björn H
Published in Bioinformatics (15.04.2013)
Published in Bioinformatics (15.04.2013)
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Journal Article
In vivo labeling reveals continuous trafficking of TCF-1+ T cells between tumor and lymphoid tissue
Li, Zhi, Tuong, Zewen K, Dean, Isaac, Willis, Claire, Gaspal, Fabrina, Fiancette, Rémi, Idris, Suaad, Kennedy, Bethany, Ferdinand, John R, Peñalver, Ana, Cabantous, Mia, Murtuza Baker, Syed, Fry, Jeremy W, Carlesso, Gianluca, Hammond, Scott A, Dovedi, Simon J, Hepworth, Matthew R, Clatworthy, Menna R, Withers, David R
Published in The Journal of experimental medicine (06.06.2022)
Published in The Journal of experimental medicine (06.06.2022)
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Journal Article
Ouroboros: cross-linking protein expression perturbations and cancer histology imaging with generative-predictive modeling
Deshpande, Srijay, Georgaka, Sokratia, Haley, Michael, Sellers, Robert, Minshull, James, Nallala, Jayakrupakar, Fergie, Martin, Stone, Nicholas, Rajpoot, Nasir, Baker, Syed Murtuza, Iqbal, Mudassar, Couper, Kevin, Roncaroli, Federico, Minhas, Fayyaz
Published in Bioinformatics (Oxford, England) (01.09.2024)
Published in Bioinformatics (Oxford, England) (01.09.2024)
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Journal Article
Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE
Fadlullah, Muhammad Zaki Hidayatullah, Neo, Wen Hao, Lie-a-ling, Michael, Thambyrajah, Roshana, Patel, Rahima, Mevel, Renaud, Aksoy, Irène, Do Khoa, Nam, Savatier, Pierre, Fontenille, Laura, Baker, Syed Murtuza, Rattray, Magnus, Kouskoff, Valerie, Lacaud, Georges
Published in Blood (20.01.2022)
Published in Blood (20.01.2022)
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Journal Article
T helper 2 cells control monocyte to tissue-resident macrophage differentiation during nematode infection of the pleural cavity
Finlay, Conor M., Parkinson, James E., Zhang, Lili, Chan, Brian H.K., Ajendra, Jesuthas, Chenery, Alistair, Morrison, Anya, Kaymak, Irem, Houlder, Emma L., Murtuza Baker, Syed, Dickie, Ben R., Boon, Louis, Konkel, Joanne E., Hepworth, Matthew R., MacDonald, Andrew S., Randolph, Gwendalyn J., Rückerl, Dominik, Allen, Judith E.
Published in Immunity (Cambridge, Mass.) (09.05.2023)
Published in Immunity (Cambridge, Mass.) (09.05.2023)
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Journal Article
HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation
Bridoux, Laure, Zarrineh, Peyman, Mallen, Joshua, Phuycharoen, Mike, Latorre, Victor, Ladam, Frank, Losa, Marta, Baker, Syed Murtuza, Sagerstrom, Charles, Mace, Kimberly A, Rattray, Magnus, Bobola, Nicoletta
Published in PLoS genetics (14.12.2020)
Published in PLoS genetics (14.12.2020)
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Journal Article
Rapid functional impairment of natural killer cells following tumor entry limits anti-tumor immunity
Dean, Isaac, Lee, Colin Y. C., Tuong, Zewen K., Li, Zhi, Tibbitt, Christopher A., Willis, Claire, Gaspal, Fabrina, Kennedy, Bethany C., Matei-Rascu, Veronika, Fiancette, Rémi, Nordenvall, Caroline, Lindforss, Ulrik, Baker, Syed Murtuza, Stockmann, Christian, Sexl, Veronika, Hammond, Scott A., Dovedi, Simon J., Mjösberg, Jenny, Hepworth, Matthew R., Carlesso, Gianluca, Clatworthy, Menna R., Withers, David R.
Published in Nature communications (24.01.2024)
Published in Nature communications (24.01.2024)
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Journal Article
Foxm1 regulates neural progenitor fate during spinal cord regeneration
Pelzer, Diane, Phipps, Lauren S, Thuret, Raphael, Gallardo-Dodd, Carlos J, Baker, Syed Murtuza, Dorey, Karel
Published in EMBO reports (06.09.2021)
Published in EMBO reports (06.09.2021)
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Journal Article
Kidney organoids recapitulate human basement membrane assembly in health and disease
Morais, Mychel R P T, Tian, Pinyuan, Lawless, Craig, Murtuza-Baker, Syed, Hopkinson, Louise, Woods, Steven, Mironov, Aleksandr, Long, David A, Gale, Daniel P, Zorn, Telma M T, Kimber, Susan J, Zent, Roy, Lennon, Rachel
Published in eLife (25.01.2022)
Published in eLife (25.01.2022)
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Journal Article
The small inhibitor WM-1119 effectively targets KAT6A-rearranged AML, but not KMT2A-rearranged AML, despite shared KAT6 genetic dependency
Sheridan, Mathew, Maqbool, Muhammad Ahmad, Largeot, Anne, Clayfield, Liam, Xu, Jingru, Moncaut, Natalia, Sellers, Robert, Whittle, Jessica, Paggetti, Jerome, Iqbal, Mudassar, Aucagne, Romain, Delva, Laurent, Baker, Syed Murtuza, Lie-A-Ling, Michael, Kouskoff, Valerie, Lacaud, Georges
Published in Journal of hematology and oncology (08.10.2024)
Published in Journal of hematology and oncology (08.10.2024)
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Journal Article
Pro- and anti-tumour activities of CD146/MCAM in breast cancer result from its heterogeneous expression and association with epithelial to mesenchymal transition
Mannion, Aarren J, Odell, Adam F, Baker, Syed Murtuza, Matthews, Laura C, Jones, Pamela F, Cook, Graham P
Published in Frontiers in cell and developmental biology (2023)
Published in Frontiers in cell and developmental biology (2023)
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Journal Article
Classifying cells with Scasat, a single-cell ATAC-seq analysis tool
Baker, Syed Murtuza, Rogerson, Connor, Hayes, Andrew, Sharrocks, Andrew D, Rattray, Magnus
Published in Nucleic acids research (25.01.2019)
Published in Nucleic acids research (25.01.2019)
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Journal Article
Reciprocal transcription factor networks govern tissue-resident ILC3 subset function and identity
Fiancette, Rémi, Finlay, Conor M., Willis, Claire, Bevington, Sarah L., Soley, Jake, Ng, Sky T. H., Baker, Syed Murtuza, Andrews, Simon, Hepworth, Matthew R., Withers, David R.
Published in Nature immunology (01.10.2021)
Published in Nature immunology (01.10.2021)
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Journal Article
An integrative multi-omic approach defines therapeutic pathways associated with altered cell state and chromatin organisation in human liver fibrosis
Jokl, Elliot, Mullan, Aoibheann, Athwal, Varinder, Simpson, Kara, Hammond, Nigel, Georgaka, Sokratia, Murtuza-Baker, Syed, Street, Oliver, Hanley, Neil, Hanley, Karen Piper
Published in Journal of hepatology (01.06.2023)
Published in Journal of hepatology (01.06.2023)
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Journal Article
GS-010 - An integrative multi-omic approach defines therapeutic pathways associated with altered cell state and chromatin organisation in human liver fibrosis
Jokl, Elliot, Mullan, Aoibheann, Athwal, Varinder, Simpson, Kara, Hammond, Nigel, Georgaka, Sokratia, Murtuza-Baker, Syed, Street, Oliver, Hanley, Neil, Hanley, Karen Piper
Published in Journal of hepatology (01.06.2023)
Published in Journal of hepatology (01.06.2023)
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Journal Article