Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model
Klann, Jeffrey G, Joss, Matthew A H, Embree, Kevin, Murphy, Shawn N
Published in PloS one (19.02.2019)
Published in PloS one (19.02.2019)
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Journal Article
Individualized prediction of COVID-19 adverse outcomes with MLHO
Estiri, Hossein, Strasser, Zachary H., Murphy, Shawn N.
Published in Scientific reports (05.03.2021)
Published in Scientific reports (05.03.2021)
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Journal Article
Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts
Liao, Katherine P, Ananthakrishnan, Ashwin N, Kumar, Vishesh, Xia, Zongqi, Cagan, Andrew, Gainer, Vivian S, Goryachev, Sergey, Chen, Pei, Savova, Guergana K, Agniel, Denis, Churchill, Susanne, Lee, Jaeyoung, Murphy, Shawn N, Plenge, Robert M, Szolovits, Peter, Kohane, Isaac, Shaw, Stanley Y, Karlson, Elizabeth W, Cai, Tianxi
Published in PloS one (24.08.2015)
Published in PloS one (24.08.2015)
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Journal Article
Semi-supervised encoding for outlier detection in clinical observation data
Estiri, Hossein, Murphy, Shawn N.
Published in Computer methods and programs in biomedicine (01.11.2019)
Published in Computer methods and programs in biomedicine (01.11.2019)
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Journal Article
High-throughput phenotyping with temporal sequences
Estiri, Hossein, Strasser, Zachary H, Murphy, Shawn N
Published in Journal of the American Medical Informatics Association : JAMIA (18.03.2021)
Published in Journal of the American Medical Informatics Association : JAMIA (18.03.2021)
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Journal Article
Polar labeling: silver standard algorithm for training disease classifiers
Wagholikar, Kavishwar B, Estiri, Hossein, Murphy, Marykate, Murphy, Shawn N
Published in Bioinformatics (01.05.2020)
Published in Bioinformatics (01.05.2020)
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Journal Article
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2)
Murphy, Shawn N, Weber, Griffin, Mendis, Michael, Gainer, Vivian, Chueh, Henry C, Churchill, Susanne, Kohane, Isaac
Published in Journal of the American Medical Informatics Association : JAMIA (01.03.2010)
Published in Journal of the American Medical Informatics Association : JAMIA (01.03.2010)
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Journal Article
Out-of-system Care and Recording of Patient Characteristics Critical for Comparative Effectiveness Research
Lin, Kueiyu Joshua, Glynn, Robert J, Singer, Daniel E, Murphy, Shawn N, Lii, Joyce, Schneeweiss, Sebastian
Published in Epidemiology (Cambridge, Mass.) (01.05.2018)
Published in Epidemiology (Cambridge, Mass.) (01.05.2018)
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Journal Article
The co-morbidity burden of children and young adults with autism spectrum disorders
Kohane, Isaac S, McMurry, Andrew, Weber, Griffin, MacFadden, Douglas, Rappaport, Leonard, Kunkel, Louis, Bickel, Jonathan, Wattanasin, Nich, Spence, Sarah, Murphy, Shawn, Churchill, Susanne
Published in PloS one (12.04.2012)
Published in PloS one (12.04.2012)
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Journal Article
Estimates of SARS-CoV-2 Omicron BA.2 Subvariant Severity in New England
Strasser, Zachary H, Greifer, Noah, Hadavand, Aboozar, Murphy, Shawn N, Estiri, Hossein
Published in JAMA network open (03.10.2022)
Published in JAMA network open (03.10.2022)
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Journal Article
SHRINE: enabling nationally scalable multi-site disease studies
McMurry, Andrew J, Murphy, Shawn N, MacFadden, Douglas, Weber, Griffin, Simons, William W, Orechia, John, Bickel, Jonathan, Wattanasin, Nich, Gilbert, Clint, Trevvett, Philip, Churchill, Susanne, Kohane, Isaac S
Published in PloS one (07.03.2013)
Published in PloS one (07.03.2013)
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Journal Article
Human leucocyte antigen (HLA) expression of primary trophoblast cells and placental cell lines, determined using single antigen beads to characterize allotype specificities of anti-HLA antibodies
Apps, Richard, Murphy, Shawn P, Fernando, Raymond, Gardner, Lucy, Ahad, Tashmeeta, Moffett, Ashley
Published in Immunology (01.05.2009)
Published in Immunology (01.05.2009)
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Journal Article
Roles of natural resistance‐associated macrophage protein‐1 in modulating bacterial distribution and immune responses during Salmonella enterica serovar Typhimurium infection in murine pregnancy
Agbayani, Gerard, Clark, Kristina, Sad, Subash, Murphy, Shawn P., Krishnan, Lakshmi
Published in American journal of reproductive immunology (1989) (01.10.2022)
Published in American journal of reproductive immunology (1989) (01.10.2022)
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Journal Article
Predicting COVID-19 mortality with electronic medical records
Estiri, Hossein, Strasser, Zachary H., Klann, Jeffy G., Naseri, Pourandokht, Wagholikar, Kavishwar B., Murphy, Shawn N.
Published in NPJ digital medicine (04.02.2021)
Published in NPJ digital medicine (04.02.2021)
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Journal Article
Identifying Patients With High Data Completeness to Improve Validity of Comparative Effectiveness Research in Electronic Health Records Data
Lin, Kueiyu Joshua, Singer, Daniel E, Glynn, Robert J, Murphy, Shawn N, Lii, Joyce, Schneeweiss, Sebastian
Published in Clinical pharmacology and therapeutics (01.05.2018)
Published in Clinical pharmacology and therapeutics (01.05.2018)
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Journal Article
Pharmacotherapy for Hospitalized Patients with COVID-19: Treatment Patterns by Disease Severity
Lin, Kueiyu Joshua, Schneeweiss, Sebastian, Tesfaye, Helen, D’Andrea, Elvira, Liu, Jun, Lii, Joyce, Murphy, Shawn N., Gagne, Joshua J.
Published in Drugs (New York, N.Y.) (01.12.2020)
Published in Drugs (New York, N.Y.) (01.12.2020)
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Journal Article
Combining clinical and genomics queries using i2b2 - Three methods
Murphy, Shawn N, Avillach, Paul, Bellazzi, Riccardo, Phillips, Lori, Gabetta, Matteo, Eran, Alal, McDuffie, Michael T, Kohane, Isaac S
Published in PloS one (07.04.2017)
Published in PloS one (07.04.2017)
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Journal Article
Interferon Gamma in Successful Pregnancies
Murphy, Shawn P, Tayade, Chandrakant, Ashkar, Ali A, Hatta, Kota, Zhang, Jianhong, Croy, B. Anne
Published in Biology of reproduction (01.05.2009)
Published in Biology of reproduction (01.05.2009)
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Journal Article