Local regulation of gene expression by lncRNA promoters, transcription and splicing
Engreitz, Jesse M, Haines, Jenna E, Perez, Elizabeth M, Munson, Glen, Chen, Jenny, Kane, Michael, McDonel, Patrick E, Guttman, Mitchell, Lander, Eric S
Published in Nature (London) (17.11.2016)
Published in Nature (London) (17.11.2016)
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Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations
Fulco, Charles P, Nasser, Joseph, Jones, Thouis R, Munson, Glen, Bergman, Drew T, Subramanian, Vidya, Grossman, Sharon R, Anyoha, Rockwell, Doughty, Benjamin R, Patwardhan, Tejal A, Nguyen, Tung H, Kane, Michael, Perez, Elizabeth M, Durand, Neva C, Lareau, Caleb A, Stamenova, Elena K, Aiden, Erez Lieberman, Lander, Eric S, Engreitz, Jesse M
Published in Nature genetics (01.12.2019)
Published in Nature genetics (01.12.2019)
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lincRNAs act in the circuitry controlling pluripotency and differentiation
GUTTMAN, Mitchell, DONAGHEY, Julie, XIAOPING YANG, AMIT, Ido, MEISSNER, Alexander, REGEV, Aviv, RINN, John L, ROOT, David E, LANDER, Eric S, CAREY, Bryce W, GARBER, Manuel, GRENIER, Jennifer K, MUNSON, Glen, YOUNG, Geneva, BERGSTROM LUCAS, Anne, ACH, Robert, BRUHN, Laurakay
Published in Nature (London) (15.09.2011)
Published in Nature (London) (15.09.2011)
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Systematic mapping of functional enhancer-promoter connections with CRISPR interference
Fulco, Charles P., Munschauer, Mathias, Anyoha, Rockwell, Munson, Glen, Grossman, Sharon R., Perez, Elizabeth M., Kane, Michael, Cleary, Brian, Lander, Eric S., Engreitz, Jesse M.
Published in Science (American Association for the Advancement of Science) (11.11.2016)
Published in Science (American Association for the Advancement of Science) (11.11.2016)
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Massively parallel base editing to map variant effects in human hematopoiesis
Martin-Rufino, Jorge D., Castano, Nicole, Pang, Michael, Grody, Emanuelle I., Joubran, Samantha, Caulier, Alexis, Wahlster, Lara, Li, Tongqing, Qiu, Xiaojie, Riera-Escandell, Anna Maria, Newby, Gregory A., Al’Khafaji, Aziz, Chaudhary, Santosh, Black, Susan, Weng, Chen, Munson, Glen, Liu, David R., Wlodarski, Marcin W., Sims, Kacie, Oakley, Jamie H., Fasano, Ross M., Xavier, Ramnik J., Lander, Eric S., Klein, Daryl E., Sankaran, Vijay G.
Published in Cell (25.05.2023)
Published in Cell (25.05.2023)
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Abstract 14675: High-Throughput CRISPR Screening Links CAD Loci to Endothelial Cell Programs and Causal Pathways
Gupta, Rajat M, Schnitzler, Gavin R, Kang, Helen, Ma, Rosa R, Lee-Kim, Vivian, Zeng, Anthony, Zhou, Ronghao, Vellarikkal, Shamsudheen K, Sias, Oscar, Munson, Glen, Guo, Katherine, Cleary, Brian, Lander, Eric, Engreitz, Jesse M
Published in Circulation (New York, N.Y.) (08.11.2022)
Published in Circulation (New York, N.Y.) (08.11.2022)
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Convergence of coronary artery disease genes onto endothelial cell programs
Schnitzler, Gavin R, Kang, Helen, Fang, Shi, Angom, Ramcharan S, Lee-Kim, Vivian S, Ma, X Rosa, Zhou, Ronghao, Zeng, Tony, Guo, Katherine, Taylor, Martin S, Vellarikkal, Shamsudheen K, Barry, Aurelie E, Sias-Garcia, Oscar, Bloemendal, Alex, Munson, Glen, Guckelberger, Philine, Nguyen, Tung H, Bergman, Drew T, Hinshaw, Stephen, Cheng, Nathan, Cleary, Brian, Aragam, Krishna, Lander, Eric S, Finucane, Hilary K, Mukhopadhyay, Debabrata, Gupta, Rajat M, Engreitz, Jesse M
Published in Nature (London) (22.02.2024)
Published in Nature (London) (22.02.2024)
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Genome-wide enhancer maps link risk variants to disease genes
Nasser, Joseph, Bergman, Drew T, Fulco, Charles P, Guckelberger, Philine, Doughty, Benjamin R, Patwardhan, Tejal A, Jones, Thouis R, Nguyen, Tung H, Ulirsch, Jacob C, Lekschas, Fritz, Mualim, Kristy, Natri, Heini M, Weeks, Elle M, Munson, Glen, Kane, Michael, Kang, Helen Y, Cui, Ang, Ray, John P, Eisenhaure, Thomas M, Collins, Ryan L, Dey, Kushal, Pfister, Hanspeter, Price, Alkes L, Epstein, Charles B, Kundaje, Anshul, Xavier, Ramnik J, Daly, Mark J, Huang, Hailiang, Finucane, Hilary K, Hacohen, Nir, Lander, Eric S, Engreitz, Jesse M
Published in Nature (London) (13.05.2021)
Published in Nature (London) (13.05.2021)
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Abstract NG08: Dissecting and quantifying pancreatic cancer plasticity using single-cell multiomics, lineage tracing and functional genomics reveals novel mediators of therapy resistance
Mehta, Arnav, Bi, Lynn, Yeramosu, Deepika, Bogaev, Michael, Jankowiak, Martin, Collins, Abigail, Al'Khafaji, Aziz, Parikh, Milan, Babadi, Mehrtash, Evans, Kyle, Bloemendal, Alex, Kunnes, Russell, Schwartz, Marc, Munson, Glen, Donnard, Elisa, Jones, Thouis R., Stanger, Ben Z., Shendure, Jay, Weissman, Jonathan, Ting, David T., Aguirre, Andrew, Hacohen, Nir, Pe'er, Dana, Lander, Eric S.
Published in Cancer research (Chicago, Ill.) (05.04.2024)
Published in Cancer research (Chicago, Ill.) (05.04.2024)
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Abstract B016: Quantifying and dissecting pancreatic cancer cell phenotypic plasticity using lineage tracing, single-cell multiomics and CRISPR perturbations reveals novel regulators of plastic states
Mehta, Arnav, Bi, Lynn, Al'Khafaji, Aziz, Jankowiak, Martin, Parikh, Milan, Babadi, Mehrtash, Bloemendal, Alex, Schwartz, Marc, Munson, Glen, Chan, Joeseph, Burdziak, Cassandra, Donnard, Elisa, Park, Ryan, Lu, Chen, Rigollet, Philippe, Aguirre, Andrew, Subramanian, Vidya, Jones, Ray, Lander, Eric S., Ting, David T., Pe'er, Dana, Hacohen, Nir
Published in Cancer research (Chicago, Ill.) (15.11.2022)
Published in Cancer research (Chicago, Ill.) (15.11.2022)
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Rewriting regulatory DNA to dissect and reprogram gene expression
Martyn, Gabriella E, Montgomery, Michael T, Jones, Hank, Guo, Katherine, Doughty, Benjamin R, Linder, Johannes, Chen, Ziwei, Cochran, Kelly, Lawrence, Kathryn A, Munson, Glen, Pampari, Anusri, Fulco, Charles P, Kelley, David R, Lander, Eric S, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv : the preprint server for biology (21.12.2023)
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Published in bioRxiv : the preprint server for biology (21.12.2023)
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Cohesin-mediated 3D contacts tune enhancer-promoter regulation
Guckelberger, Philine, Doughty, Benjamin R, Munson, Glen, Rao, Suhas S P, Tan, Yingxuan, Cai, Xiangmeng Shawn, Fulco, Charles P, Nasser, Joseph, Mualim, Kristy S, Bergman, Drew T, Ray, Judhajeet, Jagoda, Evelyn, Munger, Chad J, Gschwind, Andreas R, Sheth, Maya U, Tan, Anthony S, Pulido, Saul Godinez, Mitra, Namita, Weisz, David, Shamim, Muhammad Saad, Durand, Neva C, Mahajan, Ragini, Khan, Ruqayya, Steinmetz, Lars M, Kanemaki, Masato T, Lander, Eric S, Meissner, Alexander, Aiden, Erez Lieberman, Engreitz, Jesse M
Published in bioRxiv (22.07.2024)
Published in bioRxiv (22.07.2024)
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Journal Article
Rewriting regulatory DNA to dissect and reprogram gene expression
Martyn, Gabriella E, Montgomery, Michael T, Jones, Hank, Guo, Katherine, Doughty, Benjamin R, Linder, Johannes, Chen, Ziwei, Cochran, Kelly, Lawrence, Kathryn A, Munson, Glen, Pampari, Anusri, Fulco, Charles P, Kelley, David R, Lander, Eric S, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv (21.12.2023)
Published in bioRxiv (21.12.2023)
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Paper
Mapping the convergence of genes for coronary artery disease onto endothelial cell programs
Schnitzler, Gavin R, Kang, Helen, Lee-Kim, Vivian S, Ma, Rosa X, Zeng, Tony, Angom, Ramcharan S, Shi, Fang, Shamsudheen Karuthedath Vellarikkal, Zhou, Ronghao, Guo, Katherine, Sias-Garcia, Oscar, Bloemendal, Alex, Munson, Glen, Guckelberger, Philine, Nguyen, Tung H, Bergman, Drew T, Cheng, Nathan, Cleary, Brian, Aragam, Krishna, Mukhopadhyay, Debabrata, Lander, Eric S, Finucane, Hilary K, Gupta, Rajat M, Engreitz, Jesse M
Published in bioRxiv (04.11.2022)
Published in bioRxiv (04.11.2022)
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Paper
Genome-wide maps of enhancer regulation connect risk variants to disease genes
Nasser, Joseph, Bergman, Drew T, Fulco, Charles P, Guckelberger, Philine, Doughty, Benjamin R, Patwardhan, Tejal A, Jones, Thouis R, Nguyen, Tung H, Ulirsch, Jacob C, Natri, Heini M, Weeks, Elle M, Munson, Glen, Kane, Michael, Kang, Helen Y, Cui, Ang, Ray, John P, Eisenhaure, Tom M, Mualim, Kristy, Collins, Ryan L, Dey, Kushal, Price, Alkes L, Epstein, Charles B, Kundaje, Anshul, Xavier, Ramnik J, Daly, Mark J, Huang, Hailiang, Finucane, Hilary K, Hacohen, Nir, Lander, Eric S, Engreitz, Jesse M
Published in bioRxiv (03.09.2020)
Published in bioRxiv (03.09.2020)
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Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations
Fulco, Charles P, Nasser, Joseph, Jones, Thouis R, Munson, Glen, Bergman, Drew T, Subramanian, Vidya, Grossman, Sharon R, Rockwell Anyoha, Patwardhan, Tejal A, Nguyen, Tung H, Kane, Michael, Doughty, Benjamin, Perez, Elizabeth M, Durand, Neva C, Stamenova, Elena K, Erez Lieberman Aiden, Lander, Eric S, Engreitz, Jesse M
Published in bioRxiv (26.01.2019)
Published in bioRxiv (26.01.2019)
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