Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Published in Neuron (Cambridge, Mass.) (17.06.2015)
Published in Neuron (Cambridge, Mass.) (17.06.2015)
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Journal Article
Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes
Armand, Ethan J, Li, Junhao, Xie, Fangming, Luo, Chongyuan, Mukamel, Eran A
Published in Neuron (Cambridge, Mass.) (06.01.2021)
Published in Neuron (Cambridge, Mass.) (06.01.2021)
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Journal Article
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Fang, Rongxin, Preissl, Sebastian, Li, Yang, Hou, Xiaomeng, Lucero, Jacinta, Wang, Xinxin, Motamedi, Amir, Shiau, Andrew K., Zhou, Xinzhu, Xie, Fangming, Mukamel, Eran A., Zhang, Kai, Zhang, Yanxiao, Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature communications (26.02.2021)
Published in Nature communications (26.02.2021)
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Journal Article
Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data
Mukamel, Eran A., Nimmerjahn, Axel, Schnitzer, Mark J.
Published in Neuron (Cambridge, Mass.) (24.09.2009)
Published in Neuron (Cambridge, Mass.) (24.09.2009)
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Journal Article
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
Luo, Chongyuan, Keown, Christopher L., Kurihara, Laurie, Zhou, Jingtian, He, Yupeng, Li, Junhao, Castanon, Rosa, Lucero, Jacinta, Nery, Joseph R., Sandoval, Justin P., Bui, Brian, Sejnowski, Terrence J., Harkins, Timothy T., Mukamel, Eran A., Behrens, M. Margarita, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (11.08.2017)
Published in Science (American Association for the Advancement of Science) (11.08.2017)
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Journal Article
Global Epigenomic Reconfiguration During Mammalian Brain Development
Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (09.08.2013)
Published in Science (American Association for the Advancement of Science) (09.08.2013)
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Journal Article
Motor Behavior Activates Bergmann Glial Networks
Nimmerjahn, Axel, Mukamel, Eran A., Schnitzer, Mark J.
Published in Neuron (Cambridge, Mass.) (14.05.2009)
Published in Neuron (Cambridge, Mass.) (14.05.2009)
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Journal Article
Electroencephalogram signatures of loss and recovery of consciousness from propofol
Purdon, Patrick L, Pierce, Eric T, Mukamel, Eran A, Prerau, Michael J, Walsh, John L, Wong, Kin Foon K, Salazar-Gomez, Andres F, Harrell, Priscilla G, Sampson, Aaron L, Cimenser, Aylin, Ching, ShiNung, Kopell, Nancy J, Tavares-Stoeckel, Casie, Habeeb, Kathleen, Merhar, Rebecca, Brown, Emery N
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2013)
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Journal Article
Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus
Zhang, Tie-Yuan, Keown, Christopher L., Wen, Xianglan, Li, Junhao, Vousden, Dulcie A., Anacker, Christoph, Bhattacharyya, Urvashi, Ryan, Richard, Diorio, Josie, O’Toole, Nicholas, Lerch, Jason P., Mukamel, Eran A., Meaney, Michael J.
Published in Nature communications (19.01.2018)
Published in Nature communications (19.01.2018)
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Journal Article
Rapid fragmentation of neuronal networks at the onset of propofol-induced unconsciousness
Lewis, Laura D, Weiner, Veronica S, Mukamel, Eran A, Donoghue, Jacob A, Eskandar, Emad N, Madsen, Joseph R, Anderson, William S, Hochberg, Leigh R, Cash, Sydney S, Brown, Emery N, Purdon, Patrick L
Published in Proceedings of the National Academy of Sciences - PNAS (04.12.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (04.12.2012)
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Journal Article
Cellular and genetic drivers of RNA editing variation in the human brain
Cuddleston, Winston H., Li, Junhao, Fan, Xuanjia, Kozenkov, Alexey, Lalli, Matthew, Khalique, Shahrukh, Dracheva, Stella, Mukamel, Eran A., Breen, Michael S.
Published in Nature communications (30.05.2022)
Published in Nature communications (30.05.2022)
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Journal Article
Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation
Li, Junhao, Jaiswal, Manoj K., Chien, Jo-Fan, Kozlenkov, Alexey, Jung, Jinyoung, Zhou, Ping, Gardashli, Mahammad, Pregent, Luc J., Engelberg-Cook, Erica, Dickson, Dennis W., Belzil, Veronique V., Mukamel, Eran A., Dracheva, Stella
Published in Nature communications (15.09.2023)
Published in Nature communications (15.09.2023)
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Journal Article
High-speed, miniaturized fluorescence microscopy in freely moving mice
Barretto, Robert P J, Jung, Juergen C, Ko, Tony H, Cocker, Eric D, Nimmerjahn, Axel, Flusberg, Benjamin A, Burns, Laurie D, Schnitzer, Mark J, Mukamel, Eran A
Published in Nature methods (01.11.2008)
Published in Nature methods (01.11.2008)
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Journal Article
Advances in light microscopy for neuroscience
Wilt, Brian A, Burns, Laurie D, Wei Ho, Eric Tatt, Ghosh, Kunal K, Mukamel, Eran A, Schnitzer, Mark J
Published in Annual review of neuroscience (01.01.2009)
Published in Annual review of neuroscience (01.01.2009)
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Journal Article
Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain
Keown, Christopher L., Berletch, Joel B., Castanon, Rosa, Nery, Joseph R., Disteche, Christine M., Ecker, Joseph R., Mukamel, Eran A.
Published in Proceedings of the National Academy of Sciences - PNAS (04.04.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (04.04.2017)
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Journal Article
Epigenomic landscapes of retinal rods and cones
Mo, Alisa, Luo, Chongyuan, Davis, Fred P, Mukamel, Eran A, Henry, Gilbert L, Nery, Joseph R, Urich, Mark A, Picard, Serge, Lister, Ryan, Eddy, Sean R, Beer, Michael A, Ecker, Joseph R, Nathans, Jeremy
Published in eLife (07.03.2016)
Published in eLife (07.03.2016)
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Journal Article
A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons
Kozlenkov, Alexey, Li, Junhao, Apontes, Pasha, Hurd, Yasmin L, Byne, William M, Koonin, Eugene V, Wegner, Michael, Mukamel, Eran A, Dracheva, Stella
Published in Science advances (01.09.2018)
Published in Science advances (01.09.2018)
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