Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes
Crump, Byron C, Wojahn, John M, Tomas, Fiona, Mueller, Ryan S
Published in Frontiers in microbiology (15.03.2018)
Published in Frontiers in microbiology (15.03.2018)
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Journal Article
Immunomodulatory effects of a probiotic combination treatment to improve the survival of Pacific oyster ( Crassostrea gigas) larvae against infection by Vibrio coralliilyticus
Hesser, Jennifer, Mueller, Ryan S, Langdon, Chris, Schubiger, Carla B
Published in Frontiers in immunology (08.04.2024)
Published in Frontiers in immunology (08.04.2024)
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Journal Article
Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat
Nguyen, Trang T H, Myrold, David D, Mueller, Ryan S
Published in Frontiers in microbiology (05.03.2019)
Published in Frontiers in microbiology (05.03.2019)
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Journal Article
Low‐Altitude UAV Imaging Accurately Quantifies Eelgrass Wasting Disease From Alaska to California
Yang, Bo, Hawthorne, Timothy L., Aoki, Lillian, Beatty, Deanna S., Copeland, Tyler, Domke, Lia K., Eckert, Ginny L., Gomes, Carla P., Graham, Olivia J., Harvell, C. Drew, Hovel, Kevin A., Hessing‐Lewis, Margot, Harper, Leah, Mueller, Ryan S., Rappazzo, Brendan, Reshitnyk, Luba, Stachowicz, John J., Tomas, Fiona, Duffy, J. Emmett
Published in Geophysical research letters (28.02.2023)
Published in Geophysical research letters (28.02.2023)
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Journal Article
Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes
Zhang, Li, Jonscher, Karen R, Zhang, Zuyuan, Xiong, Yi, Mueller, Ryan S, Friedman, Jacob E, Pan, Chongle
Published in Nature communications (21.06.2022)
Published in Nature communications (21.06.2022)
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Journal Article
Indole Acts as an Extracellular Cue Regulating Gene Expression in Vibrio cholerae
MUELLER, Ryan S, BEYHAN, Sinem, SAINI, Simran G, YILDIZ, Fitnat H, BARTLETT, Douglas H
Published in Journal of Bacteriology (01.06.2009)
Published in Journal of Bacteriology (01.06.2009)
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Journal Article
Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities
Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C, Hettich, Robert, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
Published in Frontiers in microbiology (14.06.2018)
Published in Frontiers in microbiology (14.06.2018)
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Journal Article
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
Denef, Vincent J, Kalnejais, Linda H, Mueller, Ryan S, Wilmes, Paul, Baker, Brett J, Thomas, Brian C, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2010)
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Journal Article
Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms
ALIAGA GOLTSMAN, Daniela S, DENEF, Vincent J, BAKER, Brett J, HAUSER, Loren, LAND, Miriam, SHAH, Manesh B, THELEN, Michael P, HETTICH, Robert L, BANFIELD, Jillian F, SINGER, Steven W, VERBERKMOES, Nathan C, LEFSRUD, Mark, MUELLER, Ryan S, DICK, Gregory J, SUN, Christine L, WHEELER, Korin E, ZEMLA, Adam
Published in Applied and Environmental Microbiology (01.07.2009)
Published in Applied and Environmental Microbiology (01.07.2009)
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Journal Article
Coral Bleaching Phenotypes Associated With Differential Abundances of Nucleocytoplasmic Large DNA Viruses
Messyasz, Adriana, Rosales, Stephanie M., Mueller, Ryan S., Sawyer, Teresa, Correa, Adrienne M. S., Thurber, Andrew R., Vega Thurber, Rebecca
Published in Frontiers in Marine Science (06.10.2020)
Published in Frontiers in Marine Science (06.10.2020)
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Journal Article
Defining the Mode of Action of Tetramic Acid Antibacterials Derived from Pseudomonas aeruginosa Quorum Sensing Signals
Lowery, Colin A, Park, Junguk, Gloeckner, Christian, Meijler, Michael M, Mueller, Ryan S, Boshoff, Helena I, Ulrich, Ricky L, Barry, Clifton E, Bartlett, Douglas H, Kravchenko, Vladimir V, Kaufmann, Gunnar F, Janda, Kim D
Published in Journal of the American Chemical Society (14.10.2009)
Published in Journal of the American Chemical Society (14.10.2009)
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Journal Article
Anabaena/Dolichospermum as the source of lethal microcystin levels responsible for a large cattle toxicosis event
Dreher, Theo W., Collart, Lindsay P., Mueller, Ryan S., Halsey, Kimberly H., Bildfell, Robert J., Schreder, Peter, Sobhakumari, Arya, Ferry, Rodney
Published in Toxicon X (01.01.2019)
Published in Toxicon X (01.01.2019)
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Journal Article
Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant
Brooks, Brandon, Mueller, Ryan S, Young, Jacque C, Morowitz, Michael J, Hettich, Robert L, Banfield, Jillian F
Published in Frontiers in microbiology (01.07.2015)
Published in Frontiers in microbiology (01.07.2015)
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Journal Article
Predictable Changes in Eelgrass Microbiomes with Increasing Wasting Disease Prevalence across 23° Latitude in the Northeastern Pacific
Beatty, Deanna S, Aoki, Lillian R, Rappazzo, Brendan, Bergman, Chelsea, Domke, Lia K, Duffy, J Emmett, Dubois, Katie, Eckert, Ginny L, Gomes, Carla, Graham, Olivia J, Harper, Leah, Harvell, C Drew, Hawthorne, Timothy L, Hessing-Lewis, Margot, Hovel, Kevin, Monteith, Zachary L, Mueller, Ryan S, Olson, Angeleen M, Prentice, Carolyn, Tomas, Fiona, Yang, Bo, Stachowicz, John J
Published in mSystems (30.08.2022)
Published in mSystems (30.08.2022)
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Journal Article
Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning
David, Maude M, Tataru, Christine, Pope, Quintin, Baker, Lydia J, English, Mary K, Epstein, Hannah E, Hammer, Austin, Kent, Michael, Sieler, Jr, Michael J, Mueller, Ryan S, Sharpton, Thomas J, Tomas, Fiona, Vega Thurber, Rebecca, Fern, Xiaoli Z
Published in mSystems (22.02.2022)
Published in mSystems (22.02.2022)
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Journal Article