High-throughput, single-copy sequencing reveals SARS-CoV-2 spike variants coincident with mounting humoral immunity during acute COVID-19
Ko, Sung Hee, Bayat Mokhtari, Elham, Mudvari, Prakriti, Stein, Sydney, Stringham, Christopher D, Wagner, Danielle, Ramelli, Sabrina, Ramos-Benitez, Marcos J, Strich, Jeffrey R, Davey, Jr, Richard T, Zhou, Tongqing, Misasi, John, Kwong, Peter D, Chertow, Daniel S, Sullivan, Nancy J, Boritz, Eli A
Published in PLoS pathogens (08.04.2021)
Published in PLoS pathogens (08.04.2021)
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Immune activation and exhaustion marker expression on T-cell subsets in ART-treated adolescents and young adults with perinatal HIV-1 infection as correlates of viral persistence
Huang, Yuyang, Dhummakupt, Adit, Khetan, Priya, Nilles, Tricia, Zhou, Weiqiang, Mudvari, Prakriti, Szewczyk, Joseph, Chen, Ya Hui, Boritz, Eli, Ji, Hongkai, Agwu, Allison, Persaud, Deborah
Published in Frontiers in immunology (23.03.2023)
Published in Frontiers in immunology (23.03.2023)
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MTA1 Promotes STAT3 Transcription and Pulmonary Metastasis in Breast Cancer
PAKALA, Suresh B, RAYALA, Suresh K, COSTA, Luis, KUMAR, Rakesh, WANG, Rui-An, OHSHIRO, Kazufumi, MUDVARI, Prakriti, SIRIGIRI DIVIJENDRA NATHA REDDY, YI ZHENG, PIRES, Ricardo, CASIMIRO, Sandra, RADHAKRISHNA PILLAI, M
Published in Cancer research (Chicago, Ill.) (15.06.2013)
Published in Cancer research (Chicago, Ill.) (15.06.2013)
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Genomic insights into triple-negative and HER2-positive breast cancers using isogenic model systems
Mudvari, Prakriti, Ohshiro, Kazufumi, Nair, Vasudha, Horvath, Anelia, Kumar, Rakesh
Published in PloS one (23.09.2013)
Published in PloS one (23.09.2013)
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AP-1/c-Fos supports SIV and HIV-1 latency in CD4 T cells infected in vivo
Cobos Jiménez, Viviana, Geretz, Aviva, Tokarev, Andrey, Ehrenberg, Philip K., Deletsu, Selase, Machmach, Kawthar, Mudvari, Prakriti, Howard, J. Natalie, Zelkoski, Amanda, Paquin-Proulx, Dominic, Del Prete, Gregory Q., Subra, Caroline, Boritz, Eli A., Bosque, Alberto, Thomas, Rasmi, Bolton, Diane L.
Published in iScience (20.10.2023)
Published in iScience (20.10.2023)
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Infection and Vaccine-Induced Neutralizing-Antibody Responses to the SARS-CoV-2 B.1.617 Variants
Edara, Venkata-Viswanadh, Pinsky, Benjamin A, Suthar, Mehul S, Lai, Lilin, Davis-Gardner, Meredith E, Floyd, Katharine, Flowers, Maria W, Wrammert, Jens, Hussaini, Laila, Ciric, Caroline Rose, Bechnak, Sarah, Stephens, Kathy, Graham, Barney S, Bayat Mokhtari, Elham, Mudvari, Prakriti, Boritz, Eli, Creanga, Adrian, Pegu, Amarendra, Derrien-Colemyn, Alexandrine, Henry, Amy R, Gagne, Matthew, Douek, Daniel C, Sahoo, Malaya K, Sibai, Mamdouh, Solis, Daniel, Webby, Richard J, Jeevan, Trushar, Fabrizio, Thomas P
Published in New England Journal of Medicine (12.08.2021)
Published in New England Journal of Medicine (12.08.2021)
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Co-Occurrence of COMT and BRCA1/2 Variants in a Population
Movassagh, Mercedeh, Mudvari, Prakriti, Horvath, Anelia
Published in The New England journal of medicine (25.05.2017)
Published in The New England journal of medicine (25.05.2017)
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Journal Article
Co-Occurrence of COMT and BRCA1/2 Variants in a Population: Letter
Movassagh Mercedeh, Mudvari Prakriti, Horvath Anelia
Published in The New England journal of medicine (25.05.2017)
Published in The New England journal of medicine (25.05.2017)
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Journal Article
HIV silencing and cell survival signatures in infected T cell reservoirs
Clark, Iain C, Mudvari, Prakriti, Thaploo, Shravan, Smith, Samuel, Abu-Laban, Mohammad, Hamouda, Mehdi, Theberge, Marc, Shah, Sakshi, Ko, Sung Hee, Pérez, Liliana, Bunis, Daniel G, Lee, James S, Kilam, Divya, Zakaria, Saami, Choi, Sally, Darko, Samuel, Henry, Amy R, Wheeler, Michael A, Hoh, Rebecca, Butrus, Salwan, Deeks, Steven G, Quintana, Francisco J, Douek, Daniel C, Abate, Adam R, Boritz, Eli A
Published in Nature (London) (09.02.2023)
Published in Nature (London) (09.02.2023)
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Journal Article
RNA sequencing of cancer reveals novel splicing alterations
Eswaran, Jeyanthy, Horvath, Anelia, Godbole, Sucheta, Reddy, Sirigiri Divijendra, Mudvari, Prakriti, Ohshiro, Kazufumi, Cyanam, Dinesh, Nair, Sujit, Fuqua, Suzanne A W, Polyak, Kornelia, Florea, Liliana D, Kumar, Rakesh
Published in Scientific reports (22.04.2013)
Published in Scientific reports (22.04.2013)
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FIND-seq: high-throughput nucleic acid cytometry for rare single-cell transcriptomics
Shin, Seung Won, Mudvari, Prakriti, Thaploo, Shravan, Wheeler, Michael A., Douek, Daniel C., Quintana, Francisco J., Boritz, Eli A., Abate, Adam R., Clark, Iain C.
Published in Nature protocols (22.07.2024)
Published in Nature protocols (22.07.2024)
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Protection from SARS-CoV-2 Delta one year after mRNA-1273 vaccination in rhesus macaques coincides with anamnestic antibody response in the lung
Gagne, Matthew, Corbett, Kizzmekia S., Flynn, Barbara J., Foulds, Kathryn E., Wagner, Danielle A., Andrew, Shayne F., Todd, John-Paul M., Honeycutt, Christopher Cole, McCormick, Lauren, Nurmukhambetova, Saule T., Davis-Gardner, Meredith E., Pessaint, Laurent, Bock, Kevin W., Nagata, Bianca M., Minai, Mahnaz, Werner, Anne P., Moliva, Juan I., Tucker, Courtney, Lorang, Cynthia G., Zhao, Bingchun, McCarthy, Elizabeth, Cook, Anthony, Dodson, Alan, Teng, I-Ting, Mudvari, Prakriti, Roberts-Torres, Jesmine, Laboune, Farida, Wang, Lingshu, Goode, Adrienne, Kar, Swagata, Boyoglu-Barnum, Seyhan, Yang, Eun Sung, Shi, Wei, Ploquin, Aurélie, Doria-Rose, Nicole, Carfi, Andrea, Mascola, John R., Boritz, Eli A., Edwards, Darin K., Andersen, Hanne, Lewis, Mark G., Suthar, Mehul S., Graham, Barney S., Roederer, Mario, Moore, Ian N., Nason, Martha C., Sullivan, Nancy J., Douek, Daniel C., Seder, Robert A.
Published in Cell (06.01.2022)
Published in Cell (06.01.2022)
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Journal Article
Infection and vaccine-induced neutralizing antibody responses to the SARS-CoV-2 B.1.617.1 variant
Edara, Venkata-Viswanadh, Lai, Lilin, Sahoo, Malaya K, Floyd, Katharine, Sibai, Mamdouh, Solis, Daniel, Flowers, Maria W, Hussaini, Laila, Ciric, Caroline Rose, Bechnack, Sarah, Stephens, Kathy, Mokhtari, Elham Bayat, Mudvari, Prakriti, Creanga, Adrian, Pegu, Amarendra, Derrien-Colemyn, Alexandrine, Henry, Amy R, Gagne, Matthew, Graham, Barney S, Wrammert, Jens, Douek, Daniel C, Boritz, Eli, Pinsky, Benjamin A, Suthar, Mehul S
Published in bioRxiv : the preprint server for biology (10.05.2021)
Published in bioRxiv : the preprint server for biology (10.05.2021)
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mRNA-1273 protects against SARS-CoV-2 beta infection in nonhuman primates
Corbett, Kizzmekia S, Werner, Anne P, Connell, Sarah O', Gagne, Matthew, Lai, Lilin, Moliva, Juan I, Flynn, Barbara, Choi, Angela, Koch, Matthew, Foulds, Kathryn E, Andrew, Shayne F, Flebbe, Dillon R, Lamb, Evan, Nurmukhambetova, Saule T, Provost, Samantha J, Bock, Kevin W, Minai, Mahnaz, Nagata, Bianca M, Ry, Alex Van, Flinchbaugh, Zackery, Johnston, Timothy S, Mokhtari, Elham Bayat, Mudvari, Prakriti, Henry, Amy R, Laboune, Farida, Chang, Becky, Porto, Maciel, Wear, Jaclyn, Alvarado, Gabriela S, Boyoglu-Barnum, Seyhan, Todd, John-Paul M, Bart, Bridget, Cook, Anthony, Dodson, Alan, Pessaint, Laurent, Steingrebe, Katelyn, Elbashir, Sayda, Sriparna, Manjari, Pekosz, Andrew, Andersen, Hanne, Wu, Kai, Edwards, Darin K, Kar, Swagata, Lewis, Mark G, Boritz, Eli, Moore, Ian N, Carfi, Andrea, Suthar, Mehul S, McDermott, Adrian, Roederer, Mario, Nason, Martha C, Sullivan, Nancy J, Douek, Daniel C, Graham, Barney S, Seder, Robert A
Published in Nature immunology (01.10.2021)
Published in Nature immunology (01.10.2021)
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Journal Article
SNPlice: variants that modulate Intron retention from RNA-sequencing data
Mudvari, Prakriti, Movassagh, Mercedeh, Kowsari, Kamran, Seyfi, Ali, Kokkinaki, Maria, Edwards, Nathan J, Golestaneh, Nady, Horvath, Anelia
Published in Bioinformatics (15.04.2015)
Published in Bioinformatics (15.04.2015)
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Journal Article
Transcriptomic landscape of breast cancers through mRNA sequencing
Eswaran, Jeyanthy, Cyanam, Dinesh, Mudvari, Prakriti, Reddy, Sirigiri Divijendra Natha, Pakala, Suresh B, Nair, Sujit S, Florea, Liliana, Fuqua, Suzanne A W, Godbole, Sucheta, Kumar, Rakesh
Published in Scientific reports (14.02.2012)
Published in Scientific reports (14.02.2012)
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Metastasis-associated Protein 1/Histone Deacetylase 4-Nucleosome Remodeling and Deacetylase Complex Regulates Phosphatase and Tensin Homolog Gene Expression and Function
Reddy, Sirigiri Divijendra Natha, Pakala, Suresh B., Molli, Poonam R., Sahni, Neil, Karanam, Narasimha Kumar, Mudvari, Prakriti, Kumar, Rakesh
Published in The Journal of biological chemistry (10.08.2012)
Published in The Journal of biological chemistry (10.08.2012)
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Durability of immune responses to the BNT162b2 mRNA vaccine
Suthar, Mehul S., Arunachalam, Prabhu S., Hu, Mengyun, Reis, Noah, Trisal, Meera, Raeber, Olivia, Chinthrajah, Sharon, Davis-Gardner, Meredith E., Manning, Kelly, Mudvari, Prakriti, Boritz, Eli, Godbole, Sucheta, Henry, Amy R., Douek, Daniel C., Halfmann, Peter, Kawaoka, Yoshihiro, Boyd, Scott D., Davis, Mark M., Zarnitsyna, Veronika I., Nadeau, Kari, Pulendran, Bali
Published in Med (New York, N.Y. : Online) (14.01.2022)
Published in Med (New York, N.Y. : Online) (14.01.2022)
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RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data
Movassagh, Mercedeh, Alomran, Nawaf, Mudvari, Prakriti, Dede, Merve, Dede, Cem, Kowsari, Kamran, Restrepo, Paula, Cauley, Edmund, Bahl, Sonali, Li, Muzi, Waterhouse, Wesley, Tsaneva-Atanasova, Krasimira, Edwards, Nathan, Horvath, Anelia
Published in Nucleic acids research (15.12.2016)
Published in Nucleic acids research (15.12.2016)
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Novel insights into breast cancer genetic variance through RNA sequencing
Horvath, Anelia, Pakala, Suresh Babu, Mudvari, Prakriti, Reddy, Sirigiri Divijendra Natha, Ohshiro, Kazufumi, Casimiro, Sandra, Pires, Ricardo, Fuqua, Suzanne A W, Toi, Masakazu, Costa, Luis, Nair, Sujit S, Sukumar, Saraswati, Kumar, Rakesh
Published in Scientific reports (25.07.2013)
Published in Scientific reports (25.07.2013)
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