Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools
Cer, Regina Z, Donohue, Duncan E, Mudunuri, Uma S, Temiz, Nuri A, Loss, Michael A, Starner, Nathan J, Halusa, Goran N, Volfovsky, Natalia, Yi, Ming, Luke, Brian T, Bacolla, Albino, Collins, Jack R, Stephens, Robert M
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Rare disease variant curation from literature: assessing gaps with creatine transport deficiency in focus
Lyons, Erica L, Watson, Daniel, Alodadi, Mohammad S, Haugabook, Sharie J, Tawa, Gregory J, Hannah-Shmouni, Fady, Porter, Forbes D, Collins, Jack R, Ottinger, Elizabeth A, Mudunuri, Uma S
Published in BMC genomics (16.08.2023)
Published in BMC genomics (16.08.2023)
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Journal Article
AVIA 3.0: interactive portal for genomic variant and sample level analysis
Reardon, Hue V, Che, Anney, Luke, Brian T, Ravichandran, Sarangan, Collins, Jack R, Mudunuri, Uma S
Published in Bioinformatics (Oxford, England) (15.08.2021)
Published in Bioinformatics (Oxford, England) (15.08.2021)
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Journal Article
Immuno-transcriptomic profiling of extracranial pediatric solid malignancies
Brohl, Andrew S., Sindiri, Sivasish, Wei, Jun S., Milewski, David, Chou, Hsien-Chao, Song, Young K., Wen, Xinyu, Kumar, Jeetendra, Reardon, Hue V., Mudunuri, Uma S., Collins, Jack R., Nagaraj, Sushma, Gangalapudi, Vineela, Tyagi, Manoj, Zhu, Yuelin J., Masih, Katherine E., Yohe, Marielle E., Shern, Jack F., Qi, Yue, Guha, Udayan, Catchpoole, Daniel, Orentas, Rimas J., Kuznetsov, Igor B., Llosa, Nicolas J., Ligon, John A., Turpin, Brian K., Leino, Daniel G., Iwata, Shintaro, Andrulis, Irene L., Wunder, Jay S., Toledo, Silvia R.C., Meltzer, Paul S., Lau, Ching, Teicher, Beverly A., Magnan, Heather, Ladanyi, Marc, Khan, Javed
Published in Cell reports (Cambridge) (23.11.2021)
Published in Cell reports (Cambridge) (23.11.2021)
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Journal Article
Guanine holes are prominent targets for mutation in cancer and inherited disease
Bacolla, Albino, Temiz, Nuri A, Yi, Ming, Ivanic, Joseph, Cer, Regina Z, Donohue, Duncan E, Ball, Edward V, Mudunuri, Uma S, Wang, Guliang, Jain, Aklank, Volfovsky, Natalia, Luke, Brian T, Stephens, Robert M, Cooper, David N, Collins, Jack R, Vasquez, Karen M
Published in PLoS genetics (01.09.2013)
Published in PLoS genetics (01.09.2013)
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Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data
Mudunuri, Uma S, Khouja, Mohamad, Repetski, Stephen, Venkataraman, Girish, Che, Anney, Luke, Brian T, Girard, F Pascal, Stephens, Robert M
Published in PloS one (02.12.2013)
Published in PloS one (02.12.2013)
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Journal Article
AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes
Vuong, Hue, Che, Anney, Ravichandran, Sarangan, Luke, Brian T, Collins, Jack R, Mudunuri, Uma S
Published in Bioinformatics (15.08.2015)
Published in Bioinformatics (15.08.2015)
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Journal Article
Assessment of Coagulation Homeostasis in Blunt, Penetrating, and Thermal Trauma: Guidance for a Multicenter Systems Biology Approach
Shupp, Jeffrey W, Brummel-Ziedins, Kathleen E, Cohen, Mitchell J, Freeman, Kalev, Hammamieh, Rasha, Mudunuri, Uma S, Orfeo, Thomas, Moffatt, Lauren T, Brownstein, Bernard H, Mann, Kenneth G, Jett, Marti, Pusateri, Anthony E
Published in Shock (Augusta, Ga.) (01.10.2019)
Published in Shock (Augusta, Ga.) (01.10.2019)
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Journal Article
PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data
Yang, Ruoting, Watson, Daniel, Williams, Joshua, Kumar, Raina, Campbell, Ross, Mudunuri, Uma, Hammamieh, Rasha, Jett, Marti
Published in BMC bioinformatics (29.11.2018)
Published in BMC bioinformatics (29.11.2018)
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Journal Article
Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes
Cer, Regina Z, Bruce, Kevin H, Mudunuri, Uma S, Yi, Ming, Volfovsky, Natalia, Luke, Brian T, Bacolla, Albino, Collins, Jack R, Stephens, Robert M
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
The somatic autosomal mutation matrix in cancer genomes
Temiz, Nuri A., Donohue, Duncan E., Bacolla, Albino, Vasquez, Karen M., Cooper, David N., Mudunuri, Uma, Ivanic, Joseph, Cer, Regina Z., Yi, Ming, Stephens, Robert M., Collins, Jack R., Luke, Brian T.
Published in Human genetics (01.08.2015)
Published in Human genetics (01.08.2015)
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Journal Article
Mapping and initial analysis of human subtelomeric sequence assemblies
Riethman, Harold, Ambrosini, Anthony, Castaneda, Carlos, Finklestein, Jeffrey, Hu, Xue-Lan, Mudunuri, Uma, Paul, Sheila, Wei, Jun
Published in Genome research (01.01.2004)
Published in Genome research (01.01.2004)
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Journal Article
The zinc-dependent protease activity of the botulinum neurotoxins
Lebeda, Frank J, Cer, Regina Z, Mudunuri, Uma, Stephens, Robert, Singh, Bal Ram, Adler, Michael
Published in Toxins (01.05.2010)
Published in Toxins (01.05.2010)
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Journal Article
Book Review
Tumor IsomiR Encyclopedia (TIE): a pan-cancer database of miRNA isoforms
Bofill-De Ros, Xavier, Luke, Brian, Guthridge, Robert, Mudunuri, Uma, Loss, Michael, Gu, Shuo
Published in Bioinformatics (Oxford, England) (29.09.2021)
Published in Bioinformatics (Oxford, England) (29.09.2021)
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Journal Article
Immunopathological signatures in multisystem inflammatory syndrome in children and pediatric COVID-19
Sacco, Keith, Castagnoli, Riccardo, Vakkilainen, Svetlana, Liu, Can, Delmonte, Ottavia M., Oguz, Cihan, Kaplan, Ian M., Alehashemi, Sara, Burbelo, Peter D., Bhuyan, Farzana, de Jesus, Adriana A., Dobbs, Kerry, Rosen, Lindsey B., Cheng, Aristine, Shaw, Elana, Vakkilainen, Mikko S., Pala, Francesca, Lack, Justin, Zhang, Yu, Fink, Danielle L., Oikonomou, Vasileios, Snow, Andrew L., Dalgard, Clifton L., Chen, Jinguo, Sellers, Brian A., Montealegre Sanchez, Gina A., Barron, Karyl, Rey-Jurado, Emma, Vial, Cecilia, Poli, Maria Cecilia, Licari, Amelia, Montagna, Daniela, Marseglia, Gian Luigi, Licciardi, Francesco, Ramenghi, Ugo, Discepolo, Valentina, Lo Vecchio, Andrea, Guarino, Alfredo, Eisenstein, Eli M., Imberti, Luisa, Sottini, Alessandra, Biondi, Andrea, Mató, Sayonara, Gerstbacher, Dana, Truong, Meng, Stack, Michael A., Magliocco, Mary, Bosticardo, Marita, Kawai, Tomoki, Danielson, Jeffrey J., Hulett, Tyler, Askenazi, Manor, Hu, Shaohui, Cohen, Jeffrey I., Su, Helen C., Kuhns, Douglas B., Lionakis, Michail S., Snyder, Thomas M., Holland, Steven M., Goldbach-Mansky, Raphaela, Tsang, John S., Notarangelo, Luigi D.
Published in Nature medicine (01.05.2022)
Published in Nature medicine (01.05.2022)
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Journal Article
Introducing the non-B DNA Motif Search Tool (nBMST)
Cer, Regina Z, Bruce, Kevin H, Donohue, Duncan E, Temiz, Alpay N, Bacolla, Albino, Mudunuri, Uma S, Yi, Ming, Volfovsky, Natalia, Luke, Brian T, Collins, Jack R, Stephens, Robert M
Published in Genome biology (19.09.2011)
Published in Genome biology (19.09.2011)
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Abstract 2489: Enabling data access, sharing, collaborative and reproducible research: The Frederick National Laboratory for Cancer Research (FNLCR) data coordinating center
Aiyetan, Paul, Donovan, Paul, Mott, David, Starr, Matthew, Kuchipudi, Rajani, Yelisetti, Mahesh, Hope, Debra, Zeitler, Corinne, Mudunuri, Uma, Quong, Andrew
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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A FAIR Principle Data Model for Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) and the Frederick National Laboratory Data Coordinating Center
Aiyetan, Paul, Narayan, Kedar, Mott, David, Kuchipudi, Rajani, Zeitler, Corinne, Hope, Debra, Mudunuri, Uma, Quong, Andrew
Published in Microscopy and microanalysis (01.08.2019)
Published in Microscopy and microanalysis (01.08.2019)
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