Creating reference gene annotation for the mouse C57BL6/J genome assembly
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GENCODE 2021
Frankish, Adam, Diekhans, Mark, Jungreis, Irwin, Lagarde, Julien, Loveland, Jane E, Mudge, Jonathan M, Sisu, Cristina, Wright, James C, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Boix, Carles, Carbonell Sala, Silvia, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Howe, Kevin L, Hunt, Toby, Izuogu, Osagie G, Johnson, Rory, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Riera, Ferriol Calvet, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Wolf, Maxim Y, Xu, Jinuri, Yang, Yucheng T, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Tress, Michael L, Flicek, Paul
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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GENCODE reference annotation for the human and mouse genomes
Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.
Published in Nature (London) (14.04.2022)
Published in Nature (London) (14.04.2022)
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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Endothelial glycocalyx degradation in critically ill foals
Gomez, Diego E., Kamr, Ahmed, Gilsenan, William F., Burns, Teresa A., Mudge, M. C., Hostnik, Laura D., Toribio, Ramiro E.
Published in Journal of veterinary internal medicine (01.09.2024)
Published in Journal of veterinary internal medicine (01.09.2024)
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Hospital‐Associated Complications of Older People: A Proposed Multicomponent Outcome for Acute Care
Mudge, Alison M., McRae, Prue, Hubbard, Ruth E., Peel, Nancye M., Lim, Wen Kwang, Barnett, Adrian G., Inouye, Sharon K.
Published in Journal of the American Geriatrics Society (JAGS) (01.02.2019)
Published in Journal of the American Geriatrics Society (JAGS) (01.02.2019)
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Implementing a ward-based programme to improve care for older inpatients: process evaluation of the cluster randomised CHERISH trial
Mudge, Alison M, McRae, Prue, Young, Adrienne, Blackberry, Irene, Lee-Steere, Karen, Barrimore, Sally, Quirke, Tara, Harvey, Gillian
Published in BMC health services research (21.06.2023)
Published in BMC health services research (21.06.2023)
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Functional signatures of evolutionarily young CTCF binding sites
Azazi, Dhoyazan, Mudge, Jonathan M, Odom, Duncan T, Flicek, Paul
Published in BMC biology (23.09.2020)
Published in BMC biology (23.09.2020)
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Gambierone and Sodium Channel Specific Bioactivity Are Associated with the Extracellular Metabolite Pool of the Marine Dinoflagellate Coolia palmyrensis
Leynse, Alexander K, Mudge, Elizabeth M, Turner, Andrew D, Maskrey, Benjamin H, Robertson, Alison
Published in Marine drugs (15.04.2023)
Published in Marine drugs (15.04.2023)
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Journal Article
Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)
Lagarde, Julien, Uszczynska-Ratajczak, Barbara, Santoyo-Lopez, Javier, Gonzalez, Jose Manuel, Tapanari, Electra, Mudge, Jonathan M., Steward, Charles A., Wilming, Laurens, Tanzer, Andrea, Howald, Cédric, Chrast, Jacqueline, Vela-Boza, Alicia, Rueda, Antonio, Lopez-Domingo, Francisco J., Dopazo, Joaquin, Reymond, Alexandre, Guigó, Roderic, Harrow, Jennifer
Published in Nature communications (17.08.2016)
Published in Nature communications (17.08.2016)
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Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction
Frankish, Adam, Uszczynska, Barbara, Ritchie, Graham R S, Gonzalez, Jose M, Pervouchine, Dmitri, Petryszak, Robert, Mudge, Jonathan M, Fonseca, Nuno, Brazma, Alvis, Guigo, Roderic, Harrow, Jennifer
Published in BMC genomics (18.06.2015)
Published in BMC genomics (18.06.2015)
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Navigating the facilitation journey: a qualitative, longitudinal evaluation of ‘Eat Walk Engage’ novice and experienced facilitators
Harvey, Gillian, Collyer, Sarah, McRae, Prue, Barrimore, Sally E, Demmitt, Camey, Lee-Steere, Karen, Nolan, Bernadette, Mudge, Alison M
Published in BMC health services research (20.10.2023)
Published in BMC health services research (20.10.2023)
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Ensembl 2021
Howe, Kevin L, Achuthan, Premanand, Allen, James, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Azov, Andrey G, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Charkhchi, Mehrnaz, Cummins, Carla, Da Rin Fioretto, Luca, Davidson, Claire, Dodiya, Kamalkumar, El Houdaigui, Bilal, Fatima, Reham, Gall, Astrid, Garcia Giron, Carlos, Grego, Tiago, Guijarro-Clarke, Cristina, Haggerty, Leanne, Hemrom, Anmol, Hourlier, Thibaut, Izuogu, Osagie G, Juettemann, Thomas, Kaikala, Vinay, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Gonzalez Martinez, Jose, Marugán, José Carlos, Maurel, Thomas, McMahon, Aoife C, Mohanan, Shamika, Moore, Benjamin, Muffato, Matthieu, Oheh, Denye N, Paraschas, Dimitrios, Parker, Anne, Parton, Andrew, Prosovetskaia, Irina, Sakthivel, Manoj P, Salam, Ahamed I Abdul, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Steed, Emily, Szpak, Michal, Szuba, Marek, Taylor, Kieron, Thormann, Anja, Threadgold, Glen, Walts, Brandon, Winterbottom, Andrea, Chakiachvili, Marc, Chaubal, Ameya, De Silva, Nishadi, Flint, Bethany, Frankish, Adam, Hunt, Sarah E, IIsley, Garth R, Langridge, Nick, Loveland, Jane E, Martin, Fergal J, Mudge, Jonathan M, Morales, Joanella, Perry, Emily, Ruffier, Magali, Tate, John, Thybert, David, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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