RDP3: a flexible and fast computer program for analyzing recombination
Martin, Darren P., Lemey, Philippe, Lott, Martin, Moulton, Vincent, Posada, David, Lefeuvre, Pierre
Published in Bioinformatics (01.10.2010)
Published in Bioinformatics (01.10.2010)
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Journal Article
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
Mock, Thomas, Otillar, Robert P., Strauss, Jan, McMullan, Mark, Paajanen, Pirita, Schmutz, Jeremy, Salamov, Asaf, Sanges, Remo, Toseland, Andrew, Ward, Ben J., Allen, Andrew E., Dupont, Christopher L., Frickenhaus, Stephan, Maumus, Florian, Veluchamy, Alaguraj, Wu, Taoyang, Barry, Kerrie W., Falciatore, Angela, Ferrante, Maria I., Fortunato, Antonio E., Glöckner, Gernot, Gruber, Ansgar, Hipkin, Rachel, Janech, Michael G., Kroth, Peter G., Leese, Florian, Lindquist, Erika A., Lyon, Barbara R., Martin, Joel, Mayer, Christoph, Parker, Micaela, Quesneville, Hadi, Raymond, James A., Uhlig, Christiane, Valas, Ruben E., Valentin, Klaus U., Worden, Alexandra Z., Armbrust, E. Virginia, Clark, Matthew D., Bowler, Chris, Green, Beverley R., Moulton, Vincent, van Oosterhout, Cock, Grigoriev, Igor V.
Published in Nature (London) (26.01.2017)
Published in Nature (London) (26.01.2017)
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Journal Article
Profiling of short RNAs during fleshy fruit development reveals stage‐specific sRNAome expression patterns
Mohorianu, Irina, Schwach, Frank, Jing, Runchun, Lopez‐Gomollon, Sara, Moxon, Simon, Szittya, Gyorgy, Sorefan, Karim, Moulton, Vincent, Dalmay, Tamas
Published in The Plant journal : for cell and molecular biology (01.07.2011)
Published in The Plant journal : for cell and molecular biology (01.07.2011)
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Journal Article
miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets
Paicu, Claudia, Mohorianu, Irina, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas, Moulton, Vincent, Moxon, Simon
Published in Bioinformatics (Oxford, England) (15.08.2017)
Published in Bioinformatics (Oxford, England) (15.08.2017)
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Journal Article
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
Martin, Kara, Schmidt, Katrin, Toseland, Andrew, Boulton, Chris A., Barry, Kerrie, Beszteri, Bánk, Brussaard, Corina P. D., Clum, Alicia, Daum, Chris G., Eloe-Fadrosh, Emiley, Fong, Allison, Foster, Brian, Foster, Bryce, Ginzburg, Michael, Huntemann, Marcel, Ivanova, Natalia N., Kyrpides, Nikos C., Lindquist, Erika, Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K., Rizkallah, Mariam R., Roux, Simon, Timmermans, Klaas, Tringe, Susannah G., van de Poll, Willem H., Varghese, Neha, Valentin, Klaus U., Lenton, Timothy M., Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Published in Nature communications (16.09.2021)
Published in Nature communications (16.09.2021)
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Journal Article
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
Folkes, Leighton, Moxon, Simon, Woolfenden, Hugh C, Stocks, Matthew B, Szittya, Gyorgy, Dalmay, Tamas, Moulton, Vincent
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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Journal Article
Prioritizing populations for conservation using phylogenetic networks
Volkmann, Logan, Martyn, Iain, Moulton, Vincent, Spillner, Andreas, Mooers, Arne O
Published in PloS one (28.02.2014)
Published in PloS one (28.02.2014)
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Journal Article
Multiomics in the central Arctic Ocean for benchmarking biodiversity change
Mock, Thomas, Boulton, William, Balmonte, John-Paul, Barry, Kevin, Bertilsson, Stefan, Bowman, Jeff, Buck, Moritz, Bratbak, Gunnar, Chamberlain, Emelia J, Cunliffe, Michael, Creamean, Jessie, Ebenhöh, Oliver, Eggers, Sarah Lena, Fong, Allison A, Gardner, Jessie, Gradinger, Rolf, Granskog, Mats A, Havermans, Charlotte, Hill, Thomas, Hoppe, Clara J. M, Korte, Kerstin, Larsen, Aud, Müller, Oliver, Nicolaus, Anja, Oldenburg, Ellen, Popa, Ovidiu, Rogge, Swantje, Schäfer, Hendrik, Shoemaker, Katyanne, Snoeijs-Leijonmalm, Pauline, Torstensson, Anders, Valentin, Klaus, Vader, Anna, Barry, Kerrie, Chen, I.-M. A, Clum, Alicia, Copeland, Alex, Daum, Chris, Eloe-Fadrosh, Emiley, Foster, Brian, Foster, Bryce, Grigoriev, Igor V, Huntemann, Marcel, Ivanova, Natalia, Kuo, Alan, Kyrpides, Nikos C, Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K, Salamov, Asaf, Roux, Simon, Varghese, Neha, Woyke, Tanja, Wu, Dongying, Leggett, Richard M, Moulton, Vincent, Metfies, Katja
Published in PLoS biology (17.10.2022)
Published in PLoS biology (17.10.2022)
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Journal Article
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G, Valentin, Klaus U, Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V, Leggett, Richard M, Moulton, Vincent, Mock, Thomas
Published in Microbiome (28.04.2022)
Published in Microbiome (28.04.2022)
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Journal Article
Reducing ligation bias of small RNAs in libraries for next generation sequencing
Sorefan, Karim, Pais, Helio, Hall, Adam E, Kozomara, Ana, Griffiths-Jones, Sam, Moulton, Vincent, Dalmay, Tamas
Published in Silence (30.05.2012)
Published in Silence (30.05.2012)
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Journal Article
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets
Huber, Katharina T., van Iersel, Leo, Moulton, Vincent, Scornavacca, Celine, Wu, Taoyang
Published in Algorithmica (01.01.2017)
Published in Algorithmica (01.01.2017)
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Journal Article
Structural and functional analysis of viral siRNAs
Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L, Moulton, Vincent, Burgyan, Jozsef, Dalmay, Tamas
Published in PLoS pathogens (01.04.2010)
Published in PLoS pathogens (01.04.2010)
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Journal Article
Evolution through segmental duplications and losses: a Super-Reconciliation approach
Delabre, Mattéo, El-Mabrouk, Nadia, Huber, Katharina T., Lafond, Manuel, Moulton, Vincent, Noutahi, Emmanuel, Castellanos, Miguel Sautie
Published in Algorithms for molecular biology (26.05.2020)
Published in Algorithms for molecular biology (26.05.2020)
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Journal Article
Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level
Pais, Helio, Nicolas, Francisco Esteban, Soond, Surinder M, Swingler, Tracey E, Clark, Ian M, Chantry, Andrew, Moulton, Vincent, Dalmay, Tamas
Published in RNA (Cambridge) (01.03.2010)
Published in RNA (Cambridge) (01.03.2010)
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Journal Article
Using supernetworks to distinguish hybridization from lineage-sorting
Holland, Barbara R, Benthin, Steffi, Lockhart, Peter J, Moulton, Vincent, Huber, Katharina T
Published in BMC evolutionary biology (14.07.2008)
Published in BMC evolutionary biology (14.07.2008)
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