Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Moss, Eli L, Falconer, Shannon B, Tkachenko, Ekaterina, Wang, Mingjie, Systrom, Hannah, Mahabamunuge, Jasmin, Relman, David A, Hohmann, Elizabeth L, Bhatt, Ami S
Published in PloS one (21.08.2017)
Published in PloS one (21.08.2017)
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Journal Article
Adaptive evolution of malaria parasites in French Guiana: Reversal of chloroquine resistance by acquisition of a mutation in pfcrt
Pelleau, Stéphane, Moss, Eli L., Dhingra, Satish K., Volney, Béatrice, Casteras, Jessica, Gabryszewski, Stanislaw J., Volkman, Sarah K., Wirth, Dyann F., Legrand, Eric, Fidock, David A., Neafsey, Daniel E., Musset, Lise
Published in Proceedings of the National Academy of Sciences - PNAS (15.09.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (15.09.2015)
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Journal Article
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
Zlitni, Soumaya, Bishara, Alex, Moss, Eli L, Tkachenko, Ekaterina, Kang, Joyce B, Culver, Rebecca N, Andermann, Tessa M, Weng, Ziming, Wood, Christina, Handy, Christine, Ji, Hanlee P, Batzoglou, Serafim, Bhatt, Ami S
Published in Genome medicine (29.05.2020)
Published in Genome medicine (29.05.2020)
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Journal Article
Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly
Kang, Joyce B, Siranosian, Benjamin A, Moss, Eli L, Banaei, Niaz, Andermann, Tessa M, Bhatt, Ami S
Published in BMC bioinformatics (02.12.2019)
Published in BMC bioinformatics (02.12.2019)
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Journal Article
Malaria life cycle intensifies both natural selection and random genetic drift
Chang, Hsiao-Han, Moss, Eli L., Park, Daniel J., Ndiaye, Daouda, Mboup, Souleymane, Volkman, Sarah K., Sabeti, Pardis C., Wirth, Dyann F., Neafsey, Daniel E., Hartl, Daniel L.
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2013)
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Journal Article
High-quality genome sequences of uncultured microbes by assembly of read clouds
Bishara, Alex, Moss, Eli L, Kolmogorov, Mikhail, Parada, Alma E, Weng, Ziming, Sidow, Arend, Dekas, Anne E, Batzoglou, Serafim, Bhatt, Ami S
Published in Nature biotechnology (01.12.2018)
Published in Nature biotechnology (01.12.2018)
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Journal Article
Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice
Shono, Yusuke, Docampo, Melissa D, Peled, Jonathan U, Perobelli, Suelen M, Velardi, Enrico, Tsai, Jennifer J, Slingerland, Ann E, Smith, Odette M, Young, Lauren F, Gupta, Jyotsna, Lieberman, Sophia R, Jay, Hillary V, Ahr, Katya F, Porosnicu Rodriguez, Kori A, Xu, Ke, Calarfiore, Marco, Poeck, Hendrik, Caballero, Silvia, Devlin, Sean M, Rapaport, Franck, Dudakov, Jarrod A, Hanash, Alan M, Gyurkocza, Boglarka, Murphy, George F, Gomes, Camilla, Liu, Chen, Moss, Eli L, Falconer, Shannon B, Bhatt, Ami S, Taur, Ying, Pamer, Eric G, van den Brink, Marcel R M, Jenq, Robert R
Published in Science translational medicine (18.05.2016)
Published in Science translational medicine (18.05.2016)
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Journal Article
A genomic and evolutionary approach reveals non-genetic drug resistance in malaria
Herman, Jonathan D, Rice, Daniel P, Ribacke, Ulf, Silterra, Jacob, Deik, Amy A, Moss, Eli L, Broadbent, Kate M, Neafsey, Daniel E, Desai, Michael M, Clish, Clary B, Mazitschek, Ralph, Wirth, Dyann F
Published in Genome Biology (01.01.2014)
Published in Genome Biology (01.01.2014)
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Journal Article
Genome-Level Determination of Plasmodium falciparum Blood-Stage Targets of Malarial Clinical Immunity in the Peruvian Amazon
Torres, Katherine J., Castrillon, Carlos E., Moss, Eli L., Saito, Mayuko, Tenorio, Roy, Molina, Douglas M., Davies, Huw, Neafsey, Daniel E., Felgner, Philip, Vinetz, Joseph M., Gamboa, Dionicia
Published in The Journal of infectious diseases (15.04.2015)
Published in The Journal of infectious diseases (15.04.2015)
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Journal Article
Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission
Bei, Amy K, Diouf, Ababacar, Miura, Kazutoyo, Larremore, Daniel B, Ribacke, Ulf, Tullo, Gregory, Moss, Eli L, Neafsey, Daniel E, Daniels, Rachel F, Zeituni, Amir E, Nosamiefan, Iguosadolo, Volkman, Sarah K, Ahouidi, Ambroise D, Ndiaye, Daouda, Dieye, Tandakha, Mboup, Souleymane, Buckee, Caroline O, Long, Carole A, Wirth, Dyann F
Published in Infection and immunity (01.01.2015)
Published in Infection and immunity (01.01.2015)
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Journal Article
Plasmodium falciparum population genetic complexity influences transcriptional profile and immune recognition of highly related genotypic clusters
Bei, Amy K, Larremore, Daniel B, Miura, Kazutoyo, Diouf, Ababacar, Baro, Nicholas K, Daniels, Rachel F, Griggs, Allison, Moss, Eli L, Neafsey, Daniel E, Deme, Awa B, Sy, Mouhamad, Schaffner, Stephen, Ahouidi, Ambroise D, Ndiaye, Daouda, Dieye, Tandakha, Mboup, Souleymane, Buckee, Caroline O, Volkman, Sarah K, Long, Carole A, Wirth, Dyann B
Published in bioRxiv (03.01.2020)
Published in bioRxiv (03.01.2020)
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Paper
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
Bishara, Alex, Moss, Eli L, Tkachenko, Ekaterina, Kang, Joyce B, Zlitni, Soumaya, Culver, Rebecca N, Andermann, Tessa M, Weng, Ziming, Wood, Christina, Handy, Christine, Ji, Hanlee, Batzoglou, Serafim, Bhatt, Ami S
Published in bioRxiv (02.05.2018)
Published in bioRxiv (02.05.2018)
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Paper