Test-time augmentation for deep learning-based cell segmentation on microscopy images
Moshkov, Nikita, Mathe, Botond, Kertesz-Farkas, Attila, Hollandi, Reka, Horvath, Peter
Published in Scientific reports (19.03.2020)
Published in Scientific reports (19.03.2020)
Get full text
Journal Article
SpheroidPicker for automated 3D cell culture manipulation using deep learning
Grexa, Istvan, Diosdi, Akos, Harmati, Maria, Kriston, Andras, Moshkov, Nikita, Buzas, Krisztina, Pietiäinen, Vilja, Koos, Krisztian, Horvath, Peter
Published in Scientific reports (20.07.2021)
Published in Scientific reports (20.07.2021)
Get full text
Journal Article
Predicting compound activity from phenotypic profiles and chemical structures
Moshkov, Nikita, Becker, Tim, Yang, Kevin, Horvath, Peter, Dancik, Vlado, Wagner, Bridget K, Clemons, Paul A, Singh, Shantanu, Carpenter, Anne E, Caicedo, Juan C
Published in Nature communications (08.04.2023)
Published in Nature communications (08.04.2023)
Get full text
Journal Article
Learning representations for image-based profiling of perturbations
Moshkov, Nikita, Bornholdt, Michael, Benoit, Santiago, Smith, Matthew, McQuin, Claire, Goodman, Allen, Senft, Rebecca A, Han, Yu, Babadi, Mehrtash, Horvath, Peter, Cimini, Beth A, Carpenter, Anne E, Singh, Shantanu, Caicedo, Juan C
Published in Nature communications (21.02.2024)
Published in Nature communications (21.02.2024)
Get full text
Journal Article
Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates
Piccinini, Filippo, Balassa, Tamas, Carbonaro, Antonella, Diosdi, Akos, Toth, Timea, Moshkov, Nikita, Tasnadi, Ervin A., Horvath, Peter
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
Get full text
Journal Article
Local ancestry prediction with PyLAE
Moshkov, Nikita, Smetanin, Aleksandr, Tatarinova, Tatiana V
Published in PeerJ (San Francisco, CA) (14.12.2021)
Published in PeerJ (San Francisco, CA) (14.12.2021)
Get full text
Journal Article
Nucleus segmentation: towards automated solutions
Hollandi, Reka, Moshkov, Nikita, Paavolainen, Lassi, Tasnadi, Ervin, Piccinini, Filippo, Horvath, Peter
Published in Trends in cell biology (01.04.2022)
Published in Trends in cell biology (01.04.2022)
Get full text
Journal Article
AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments
Hollandi, Réka, Diósdi, Ákos, Hollandi, Gábor, Moshkov, Nikita, Horváth, Péter
Published in Molecular biology of the cell (15.09.2020)
Published in Molecular biology of the cell (15.09.2020)
Get full text
Journal Article
SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy
Grexa, Istvan, Iván, Zsanett Zsófia, Migh, Ede, Kovács, Ferenc, Bolck, Hella A, Zheng, Xiang, Mund, Andreas, Moshkov, Nikita, Miczán, Vivien, Koos, Krisztian, Horvath, Peter
Published in Briefings in bioinformatics (22.01.2024)
Published in Briefings in bioinformatics (22.01.2024)
Get full text
Journal Article
CHAMMI: A benchmark for channel-adaptive models in microscopy imaging
Chen, Zitong, Pham, Chau, Wang, Siqi, Doron, Michael, Moshkov, Nikita, Plummer, Bryan A, Caicedo, Juan C
Published in arXiv.org (30.10.2023)
Published in arXiv.org (30.10.2023)
Get full text
Paper
Journal Article
Anchoring to Exemplars for Training Mixture-of-Expert Cell Embeddings
Wang, Siqi, Lu, Manyuan, Moshkov, Nikita, Caicedo, Juan C, Plummer, Bryan A
Published in arXiv.org (06.12.2021)
Published in arXiv.org (06.12.2021)
Get full text
Paper
Journal Article
Unbiased single-cell morphology with self-supervised vision transformers
Doron, Michael, Moutakanni, Théo, Chen, Zitong S, Moshkov, Nikita, Caron, Mathilde, Touvron, Hugo, Bojanowski, Piotr, Pernice, Wolfgang M, Caicedo, Juan C
Published in bioRxiv : the preprint server for biology (18.06.2023)
Get more information
Published in bioRxiv : the preprint server for biology (18.06.2023)
Journal Article
Learning representations for image-based profiling of perturbations
Moshkov, Nikita, Bornholdt, Michael, Benoit, Santiago, Mcquin, Claire, Smith, Matthew, Goodman, Allen, Senft, Rebecca, Han, Yu, Babadi, Mehrtash, Horvath, Peter, Cimini, Beth A, Carpenter, Anne E, Singh, Shantanu, Caicedo, Juan C
Published in bioRxiv (03.10.2022)
Published in bioRxiv (03.10.2022)
Get full text
Paper
Diverse genetic origins of medieval steppe nomad conquerors
Mikheyev, Alexander, Qiu, Lijun, Zarubin, Alexei, Moshkov, Nikita, Orlov, Yuri, Chartier, Duane, Faleeva, Tatiana, Kornienko, Igor, Klyuchnikov, Vladimir, Batieva, Elena, Tatarinova, Tatiana V
Published in bioRxiv (16.12.2019)
Published in bioRxiv (16.12.2019)
Get full text
Paper