Establishing microbial composition measurement standards with reference frames
Morton, James T, Marotz, Clarisse, Washburne, Alex, Silverman, Justin, Zaramela, Livia S, Edlund, Anna, Zengler, Karsten, Knight, Rob
Published in Nature communications (20.06.2019)
Published in Nature communications (20.06.2019)
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Journal Article
THE FREQUENCY OF HOT JUPITERS ORBITING NEARBY SOLAR-TYPE STARS
WRIGHT, J. T, MARCY, G. W, HOWARD, A. W, ASHER JOHNSON, John, MORTON, T. D, FISCHER, D. A
Published in The Astrophysical journal (10.07.2012)
Published in The Astrophysical journal (10.07.2012)
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Journal Article
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome
Hill‐Burns, Erin M., Debelius, Justine W., Morton, James T., Wissemann, William T., Lewis, Matthew R., Wallen, Zachary D., Peddada, Shyamal D., Factor, Stewart A., Molho, Eric, Zabetian, Cyrus P., Knight, Rob, Payami, Haydeh
Published in Movement disorders (01.05.2017)
Published in Movement disorders (01.05.2017)
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Journal Article
Greengenes2 unifies microbial data in a single reference tree
McDonald, Daniel, Jiang, Yueyu, Balaban, Metin, Cantrell, Kalen, Zhu, Qiyun, Gonzalez, Antonio, Morton, James T, Nicolaou, Giorgia, Parks, Donovan H, Karst, Søren M, Albertsen, Mads, Hugenholtz, Philip, DeSantis, Todd, Song, Se Jin, Bartko, Andrew, Havulinna, Aki S, Jousilahti, Pekka, Cheng, Susan, Inouye, Michael, Niiranen, Teemu, Jain, Mohit, Salomaa, Veikko, Lahti, Leo, Mirarab, Siavash, Knight, Rob
Published in Nature biotechnology (01.05.2024)
Published in Nature biotechnology (01.05.2024)
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Journal Article
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Zhu, Qiyun, Mai, Uyen, Pfeiffer, Wayne, Janssen, Stefan, Asnicar, Francesco, Sanders, Jon G, Belda-Ferre, Pedro, Al-Ghalith, Gabriel A, Kopylova, Evguenia, McDonald, Daniel, Kosciolek, Tomasz, Yin, John B, Huang, Shi, Salam, Nimaichand, Jiao, Jian-Yu, Wu, Zijun, Xu, Zhenjiang Z, Cantrell, Kalen, Yang, Yimeng, Sayyari, Erfan, Rabiee, Maryam, Morton, James T, Podell, Sheila, Knights, Dan, Li, Wen-Jun, Huttenhower, Curtis, Segata, Nicola, Smarr, Larry, Mirarab, Siavash, Knight, Rob
Published in Nature communications (02.12.2019)
Published in Nature communications (02.12.2019)
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Journal Article
Learning representations of microbe-metabolite interactions
Morton, James T, Aksenov, Alexander A, Nothias, Louis Felix, Foulds, James R, Quinn, Robert A, Badri, Michelle H, Swenson, Tami L, Van Goethem, Marc W, Northen, Trent R, Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A, Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C, Knight, Rob
Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Journal Article
A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Martino, Cameron, Morton, James T, Marotz, Clarisse A, Thompson, Luke R, Tripathi, Anupriya, Knight, Rob, Zengler, Karsten
Published in mSystems (01.01.2019)
Published in mSystems (01.01.2019)
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Journal Article
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A, Kopylova, Evguenia, Morton, James T, Zech Xu, Zhenjiang, Kightley, Eric P, Thompson, Luke R, Hyde, Embriette R, Gonzalez, Antonio, Knight, Rob
Published in mSystems (01.03.2017)
Published in mSystems (01.03.2017)
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Journal Article
Lower Airway Dysbiosis Affects Lung Cancer Progression
Tsay, Jun-Chieh J, Wu, Benjamin G, Sulaiman, Imran, Gershner, Katherine, Schluger, Rosemary, Li, Yonghua, Yie, Ting-An, Meyn, Peter, Olsen, Evan, Perez, Luisannay, Franca, Brendan, Carpenito, Joseph, Iizumi, Tadasu, El-Ashmawy, Mariam, Badri, Michelle, Morton, James T, Shen, Nan, He, Linchen, Michaud, Gaetane, Rafeq, Samaan, Bessich, Jamie L, Smith, Robert L, Sauthoff, Harald, Felner, Kevin, Pillai, Ray, Zavitsanou, Anastasia-Maria, Koralov, Sergei B, Mezzano, Valeria, Loomis, Cynthia A, Moreira, Andre L, Moore, William, Tsirigos, Aristotelis, Heguy, Adriana, Rom, William N, Sterman, Daniel H, Pass, Harvey I, Clemente, Jose C, Li, Huilin, Bonneau, Richard, Wong, Kwok-Kin, Papagiannakopoulos, Thales, Segal, Leopoldo N
Published in Cancer discovery (01.02.2021)
Published in Cancer discovery (01.02.2021)
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Journal Article
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data
Aksenov, Alexander A, Laponogov, Ivan, Zhang, Zheng, Doran, Sophie L F, Belluomo, Ilaria, Veselkov, Dennis, Bittremieux, Wout, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Maloney, Katherine N, Misra, Biswapriya B, Melnik, Alexey V, Smirnov, Aleksandr, Du, Xiuxia, Jones, 2nd, Kenneth L, Dorrestein, Kathleen, Panitchpakdi, Morgan, Ernst, Madeleine, van der Hooft, Justin J J, Gonzalez, Mabel, Carazzone, Chiara, Amézquita, Adolfo, Callewaert, Chris, Morton, James T, Quinn, Robert A, Bouslimani, Amina, Orio, Andrea Albarracín, Petras, Daniel, Smania, Andrea M, Couvillion, Sneha P, Burnet, Meagan C, Nicora, Carrie D, Zink, Erika, Metz, Thomas O, Artaev, Viatcheslav, Humston-Fulmer, Elizabeth, Gregor, Rachel, Meijler, Michael M, Mizrahi, Itzhak, Eyal, Stav, Anderson, Brooke, Dutton, Rachel, Lugan, Raphaël, Boulch, Pauline Le, Guitton, Yann, Prevost, Stephanie, Poirier, Audrey, Dervilly, Gaud, Le Bizec, Bruno, Fait, Aaron, Persi, Noga Sikron, Song, Chao, Gashu, Kelem, Coras, Roxana, Guma, Monica, Manasson, Julia, Scher, Jose U, Barupal, Dinesh Kumar, Alseekh, Saleh, Fernie, Alisdair R, Mirnezami, Reza, Vasiliou, Vasilis, Schmid, Robin, Borisov, Roman S, Kulikova, Larisa N, Knight, Rob, Wang, Mingxun, Hanna, George B, Dorrestein, Pieter C, Veselkov, Kirill
Published in Nature biotechnology (01.02.2021)
Published in Nature biotechnology (01.02.2021)
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Journal Article
The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study
Hemmings, Sian M J, Malan-Müller, Stefanie, van den Heuvel, Leigh L, Demmitt, Brittany A, Stanislawski, Maggie A, Smith, David G, Bohr, Adam D, Stamper, Christopher E, Hyde, Embriette R, Morton, James T, Marotz, Clarisse A, Siebler, Philip H, Braspenning, Maarten, Van Criekinge, Wim, Hoisington, Andrew J, Brenner, Lisa A, Postolache, Teodor T, McQueen, Matthew B, Krauter, Kenneth S, Knight, Rob, Seedat, Soraya, Lowry, Christopher A
Published in Psychosomatic medicine (01.10.2017)
Published in Psychosomatic medicine (01.10.2017)
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Journal Article
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome
Maier, Tanja V, Lucio, Marianna, Lee, Lang Ho, VerBerkmoes, Nathan C, Brislawn, Colin J, Bernhardt, Jörg, Lamendella, Regina, McDermott, Jason E, Bergeron, Nathalie, Heinzmann, Silke S, Morton, James T, González, Antonio, Ackermann, Gail, Knight, Rob, Riedel, Katharina, Krauss, Ronald M, Schmitt-Kopplin, Philippe, Jansson, Janet K
Published in mBio (17.10.2017)
Published in mBio (17.10.2017)
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Journal Article
Evaluating the impact of domestication and captivity on the horse gut microbiome
Metcalf, Jessica L, Song, Se Jin, Morton, James T, Weiss, Sophie, Seguin-Orlando, Andaine, Joly, Frédéric, Feh, Claudia, Taberlet, Pierre, Coissac, Eric, Amir, Amnon, Willerslev, Eske, Knight, Rob, McKenzie, Valerie, Orlando, Ludovic
Published in Scientific reports (14.11.2017)
Published in Scientific reports (14.11.2017)
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Journal Article
Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A, Debelius, Justine, Morton, James T, Hyde, Embriette, Robbins-Pianka, Adam, Knight, Rob
Published in mSystems (01.03.2017)
Published in mSystems (01.03.2017)
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Journal Article
Balance Trees Reveal Microbial Niche Differentiation
Morton, James T, Sanders, Jon, Quinn, Robert A, McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Navas-Molina, Jose A, Song, Se Jin, Metcalf, Jessica L, Hyde, Embriette R, Lladser, Manuel, Dorrestein, Pieter C, Knight, Rob
Published in mSystems (01.01.2017)
Published in mSystems (01.01.2017)
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Journal Article
The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients
Debelius, Justine W, Engstrand, Lars, Matussek, Andreas, Brusselaers, Nele, Morton, James T, Stenmarker, Margaretha, Olsen, Renate S
Published in Microbiology spectrum (2023)
Published in Microbiology spectrum (2023)
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Journal Article
A Jovian planet in an eccentric 11.5 day orbit around HD 1397 discovered by TESS
Nielsen, L. D., Bouchy, F., Turner, O., Giles, H., Mascareño, A. Suárez, Lovis, C., Marmier, M., Pepe, F., Ségransan, D., Udry, S., Otegi, J. F., Ottoni, G., Stalport, M., Ricker, G., Vanderspek, R., Latham, D. W., Seager, S., Winn, J. N., Jenkins, J. M., Kane, S. R., Wittenmyer, R. A., Bowler, B., Crossfield, I., Horner, J., Kielkopf, J., Morton, T., Plavchan, P., Tinney, C. G., Zhang, Hui, Wright, D. J., Mengel, M. W., Clark, J. T., Okumura, J., Addison, B., Caldwell, D. A., Cartwright, S. M., Collins, K. A., Francis, J., Guerrero, N., Huang, C. X., Matthews, E. C., Pepper, J., Rose, M., Villaseñor, J., Wohler, B., Stassun, K., Howell, S., Ciardi, D., Gonzales, E., Matson, R., Beichman, C., Schlieder, J.
Published in Astronomy and astrophysics (Berlin) (01.03.2019)
Published in Astronomy and astrophysics (Berlin) (01.03.2019)
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