MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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MEGARes: an antimicrobial resistance database for high throughput sequencing
Lakin, Steven M, Dean, Chris, Noyes, Noelle R, Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L, Ruiz, Jaime, Belk, Keith E, Morley, Paul S, Boucher, Christina
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Succinct colored de Bruijn graphs
Muggli, Martin D, Bowe, Alexander, Noyes, Noelle R, Morley, Paul S, Belk, Keith E, Raymond, Robert, Gagie, Travis, Puglisi, Simon J, Boucher, Christina
Published in Bioinformatics (Oxford, England) (15.10.2017)
Published in Bioinformatics (Oxford, England) (15.10.2017)
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Characterization and comparison of the microbiomes and resistomes of colostrum from selectively treated dry cows
Vasquez, Amy, Nydam, Daryl, Foditsch, Carla, Warnick, Lorin, Wolfe, Cory, Doster, Enrique, Morley, Paul S.
Published in Journal of dairy science (01.01.2022)
Published in Journal of dairy science (01.01.2022)
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Using a multi-omics approach to explore potential associations with rumen content and serum of cows with different milk production levels based on genomic predicted transmitting ability for milk and phenotypic milk production
Ravelo, Anay D, Ferm, Peter, Guo, Yue, Omontese, Bobwealth O, Morley, Paul S, Chen, Chi, Noyes, Noelle R, Caixeta, Luciano S
Published in PloS one (18.07.2024)
Published in PloS one (18.07.2024)
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Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain
Yang, Xiang, Noyes, Noelle R, Doster, Enrique, Martin, Jennifer N, Linke, Lyndsey M, Magnuson, Roberta J, Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R, Jones, Kenneth L, Ruiz, Jaime, Boucher, Christina, Morley, Paul S, Belk, Keith E
Published in Applied and environmental microbiology (01.04.2016)
Published in Applied and environmental microbiology (01.04.2016)
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Effectiveness of stabilization methods for the immediate and short-term preservation of bovine fecal and upper respiratory tract genomic DNA
Pinnell, Lee J, Wolfe, Cory A, Castle, Jake, Crosby, William B, Doster, Enrique, Morley, Paul S
Published in PloS one (02.04.2024)
Published in PloS one (02.04.2024)
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Genomic diversity of class I integrons from antimicrobial resistant strains of Salmonella Typhimurium isolated from livestock, poultry and humans
Rao, Sangeeta, Linke, Lyndsey, Doster, Enrique, Hyatt, Doreene, Burgess, Brandy A, Magnuson, Roberta, Pabilonia, Kristy L, Morley, Paul S
Published in PloS one (11.12.2020)
Published in PloS one (11.12.2020)
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Journal Article
Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems
Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Published in Frontiers in microbiology (04.09.2019)
Published in Frontiers in microbiology (04.09.2019)
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Not All Liver Abscesses Are Created Equal: The Impact of Tylosin and Antibiotic Alternatives on Bovine Liver Abscess Microbial Communities and a First Look at Bacteroidetes-Dominated Communities
Pinnell, Lee J, Whitlow, Carla Weissend, Huebner, Katherine L, Bryant, Tony C, Martin, Jennifer, Belk, Keith E, Morley, Paul S
Published in Frontiers in microbiology (27.04.2022)
Published in Frontiers in microbiology (27.04.2022)
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ACVIM‐Endorsed Statements: Consensus statements, evidence‐based practice guidelines and systematic reviews
Hinchcliff, Kenneth W., Morley, Paul S., DiBartola, Stephen P., Taylor, Sandra D., Harrell, Karyn A.
Published in Journal of veterinary internal medicine (01.11.2023)
Published in Journal of veterinary internal medicine (01.11.2023)
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Journal Article
No Change in Risk for Antibiotic-Resistant Salmonellosis from Beef, United States, 2002-2010
Costard, Solenne, Pouzou, Jane G, Belk, Keith E, Morley, Paul S, Schmidt, John W, Wheeler, Tommy L, Arthur, Terrance M, Zagmutt, Francisco J
Published in Emerging infectious diseases (01.09.2020)
Published in Emerging infectious diseases (01.09.2020)
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Resistome diversity in cattle and the environment decreases during beef production
Noyes, Noelle R, Yang, Xiang, Linke, Lyndsey M, Magnuson, Roberta J, Dettenwanger, Adam, Cook, Shaun, Geornaras, Ifigenia, Woerner, Dale E, Gow, Sheryl P, McAllister, Tim A, Yang, Hua, Ruiz, Jaime, Jones, Kenneth L, Boucher, Christina A, Morley, Paul S, Belk, Keith E
Published in eLife (08.03.2016)
Published in eLife (08.03.2016)
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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Zaheer, Rahat, Lakin, Steven M, Polo, Rodrigo Ortega, Cook, Shaun R, Larney, Francis J, Morley, Paul S, Booker, Calvin W, Hannon, Sherry J, Van Domselaar, Gary, Read, Ron R, McAllister, Tim A
Published in BMC microbiology (27.08.2019)
Published in BMC microbiology (27.08.2019)
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Journal Article
Effects of respiratory virus vaccination and bovine respiratory disease on the respiratory microbiome of feedlot cattle
McAtee, Taylor B, Pinnell, Lee J, Powledge, Sherri A, Wolfe, Cory A, Morley, Paul S, Richeson, John T
Published in Frontiers in microbiology (13.06.2023)
Published in Frontiers in microbiology (13.06.2023)
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Journal Article
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period
Doster, Enrique, Rovira, Pablo, Noyes, Noelle R, Burgess, Brandy A, Yang, Xiang, Weinroth, Margaret D, Lakin, Steven M, Dean, Christopher J, Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I, Boucher, Christina, Ruiz, Jamie, Belk, Keith E, Morley, Paul S
Published in Frontiers in microbiology (30.07.2018)
Published in Frontiers in microbiology (30.07.2018)
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Journal Article
Pneumonic Plague in a Dog and Widespread Potential Human Exposure in a Veterinary Hospital, United States
Schaffer, Paula A, Brault, Stephanie A, Hershkowitz, Connor, Harris, Lauren, Dowers, Kristy, House, Jennifer, Aboellail, Tawfik A, Morley, Paul S, Daniels, Joshua B
Published in Emerging infectious diseases (01.04.2019)
Published in Emerging infectious diseases (01.04.2019)
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Journal Article
Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use
Benedict, Katharine M, Gow, Sheryl P, McAllister, Tim A, Booker, Calvin W, Hannon, Sherry J, Checkley, Sylvia L, Noyes, Noelle R, Morley, Paul S
Published in PloS one (03.12.2015)
Published in PloS one (03.12.2015)
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